Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS00700

Experiment: plant=Melon; plant sample=M4; plant location=P2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS00695 and LU632_RS00700 are separated by 106 nucleotidesLU632_RS00700 and LU632_RS00705 overlap by 13 nucleotidesLU632_RS00705 and tssB are separated by 124 nucleotides LU632_RS00695: LU632_RS00695 - fimbria/pilus periplasmic chaperone, at 146,052 to 146,798 _RS00695 LU632_RS00700: LU632_RS00700 - fimbrial biogenesis outer membrane usher protein, at 146,905 to 149,541 _RS00700 LU632_RS00705: LU632_RS00705 - type 1 fimbrial protein, at 149,529 to 150,110 _RS00705 LU632_RS00710: tssB - type VI secretion system contractile sheath small subunit, at 150,235 to 150,768 tssB Position (kb) 146 147 148 149 150Strain fitness (log2 ratio) -2 -1 0 1 2 3at 145.913 kb on + strandat 145.963 kb on + strandat 145.964 kb on - strandat 145.967 kb on + strandat 145.968 kb on - strandat 145.968 kb on - strandat 145.968 kb on - strandat 145.968 kb on - strandat 145.968 kb on - strandat 146.052 kb on - strandat 146.089 kb on + strandat 146.089 kb on + strandat 146.253 kb on - strand, within LU632_RS00695at 146.833 kb on - strandat 146.909 kb on - strandat 146.941 kb on - strandat 147.008 kb on + strandat 147.008 kb on + strandat 147.041 kb on + strandat 147.183 kb on + strand, within LU632_RS00700at 147.263 kb on - strand, within LU632_RS00700at 147.289 kb on - strand, within LU632_RS00700at 147.293 kb on + strand, within LU632_RS00700at 147.298 kb on - strand, within LU632_RS00700at 147.368 kb on + strand, within LU632_RS00700at 147.375 kb on + strand, within LU632_RS00700at 147.376 kb on - strand, within LU632_RS00700at 147.430 kb on - strand, within LU632_RS00700at 147.470 kb on - strand, within LU632_RS00700at 147.520 kb on + strand, within LU632_RS00700at 147.520 kb on + strand, within LU632_RS00700at 147.521 kb on - strand, within LU632_RS00700at 147.521 kb on - strand, within LU632_RS00700at 147.522 kb on + strand, within LU632_RS00700at 147.523 kb on - strand, within LU632_RS00700at 147.523 kb on - strand, within LU632_RS00700at 147.525 kb on + strand, within LU632_RS00700at 147.526 kb on - strand, within LU632_RS00700at 147.535 kb on + strand, within LU632_RS00700at 147.536 kb on - strand, within LU632_RS00700at 147.682 kb on - strand, within LU632_RS00700at 147.682 kb on - strand, within LU632_RS00700at 147.717 kb on + strand, within LU632_RS00700at 147.718 kb on - strand, within LU632_RS00700at 147.754 kb on - strand, within LU632_RS00700at 147.782 kb on - strand, within LU632_RS00700at 147.788 kb on + strand, within LU632_RS00700at 147.789 kb on - strand, within LU632_RS00700at 147.844 kb on + strand, within LU632_RS00700at 147.845 kb on - strand, within LU632_RS00700at 147.845 kb on - strand, within LU632_RS00700at 147.845 kb on - strand, within LU632_RS00700at 148.023 kb on + strand, within LU632_RS00700at 148.032 kb on + strand, within LU632_RS00700at 148.074 kb on - strand, within LU632_RS00700at 148.104 kb on - strand, within LU632_RS00700at 148.111 kb on - strand, within LU632_RS00700at 148.171 kb on - strand, within LU632_RS00700at 148.171 kb on - strand, within LU632_RS00700at 148.174 kb on + strand, within LU632_RS00700at 148.174 kb on + strand, within LU632_RS00700at 148.174 kb on + strand, within LU632_RS00700at 148.175 kb on - strand, within LU632_RS00700at 148.175 kb on - strand, within LU632_RS00700at 148.175 kb on - strand, within LU632_RS00700at 148.175 kb on - strand, within LU632_RS00700at 148.177 kb on - strand, within LU632_RS00700at 148.183 kb on - strand, within LU632_RS00700at 148.191 kb on + strand, within LU632_RS00700at 148.200 kb on - strand, within LU632_RS00700at 148.243 kb on - strand, within LU632_RS00700at 148.258 kb on - strand, within LU632_RS00700at 148.259 kb on + strand, within LU632_RS00700at 148.259 kb on + strand, within LU632_RS00700at 148.259 kb on + strand, within LU632_RS00700at 148.259 kb on + strand, within LU632_RS00700at 148.259 kb on + strand, within LU632_RS00700at 148.261 kb on + strand, within LU632_RS00700at 148.262 kb on - strand, within LU632_RS00700at 148.262 kb on - strand, within LU632_RS00700at 148.272 kb on + strand, within LU632_RS00700at 148.277 kb on - strand, within LU632_RS00700at 148.277 kb on - strand, within LU632_RS00700at 148.277 kb on - strand, within LU632_RS00700at 148.285 kb on - strand, within LU632_RS00700at 148.338 kb on + strand, within LU632_RS00700at 148.525 kb on + strand, within LU632_RS00700at 148.527 kb on + strand, within LU632_RS00700at 148.527 kb on + strand, within LU632_RS00700at 148.550 kb on - strand, within LU632_RS00700at 148.550 kb on - strand, within LU632_RS00700at 148.648 kb on + strand, within LU632_RS00700at 148.679 kb on - strand, within LU632_RS00700at 148.680 kb on + strand, within LU632_RS00700at 148.683 kb on + strand, within LU632_RS00700at 148.684 kb on - strand, within LU632_RS00700at 148.757 kb on - strand, within LU632_RS00700at 148.759 kb on - strand, within LU632_RS00700at 148.834 kb on + strand, within LU632_RS00700at 148.889 kb on + strand, within LU632_RS00700at 148.890 kb on - strand, within LU632_RS00700at 148.928 kb on + strand, within LU632_RS00700at 148.929 kb on - strand, within LU632_RS00700at 148.929 kb on - strand, within LU632_RS00700at 148.929 kb on - strand, within LU632_RS00700at 148.929 kb on - strand, within LU632_RS00700at 148.929 kb on - strand, within LU632_RS00700at 148.932 kb on + strand, within LU632_RS00700at 149.088 kb on - strand, within LU632_RS00700at 149.166 kb on + strand, within LU632_RS00700at 149.174 kb on + strand, within LU632_RS00700at 149.174 kb on + strand, within LU632_RS00700at 149.319 kb on - strandat 149.322 kb on + strandat 149.323 kb on - strandat 149.349 kb on + strandat 149.350 kb on - strandat 149.429 kb on + strandat 149.432 kb on - strandat 149.432 kb on - strandat 149.432 kb on - strandat 149.435 kb on + strandat 149.435 kb on + strandat 149.639 kb on - strand, within LU632_RS00705at 149.664 kb on + strand, within LU632_RS00705at 149.694 kb on - strand, within LU632_RS00705at 149.787 kb on - strand, within LU632_RS00705at 150.021 kb on + strand, within LU632_RS00705at 150.033 kb on + strand, within LU632_RS00705at 150.299 kb on + strand, within tssBat 150.374 kb on + strand, within tssB

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Per-strain Table

Position Strand Gene LocusTag Fraction plant=Melon; plant sample=M4; plant location=P2
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145,913 + -0.3
145,963 + -0.9
145,964 - -0.2
145,967 + +0.2
145,968 - -0.2
145,968 - -0.4
145,968 - -0.5
145,968 - -0.9
145,968 - -0.6
146,052 - -1.7
146,089 + +0.3
146,089 + +2.9
146,253 - LU632_RS00695 0.27 -0.4
146,833 - +2.0
146,909 - +0.6
146,941 - +0.1
147,008 + +0.2
147,008 + +0.7
147,041 + -1.1
147,183 + LU632_RS00700 0.11 -0.7
147,263 - LU632_RS00700 0.14 -0.6
147,289 - LU632_RS00700 0.15 -0.1
147,293 + LU632_RS00700 0.15 +0.1
147,298 - LU632_RS00700 0.15 +0.2
147,368 + LU632_RS00700 0.18 -1.2
147,375 + LU632_RS00700 0.18 -2.1
147,376 - LU632_RS00700 0.18 -1.6
147,430 - LU632_RS00700 0.20 +1.8
147,470 - LU632_RS00700 0.21 +0.7
147,520 + LU632_RS00700 0.23 -2.0
147,520 + LU632_RS00700 0.23 -1.9
147,521 - LU632_RS00700 0.23 -0.3
147,521 - LU632_RS00700 0.23 +0.3
147,522 + LU632_RS00700 0.23 +1.3
147,523 - LU632_RS00700 0.23 -0.5
147,523 - LU632_RS00700 0.23 +1.3
147,525 + LU632_RS00700 0.24 +0.1
147,526 - LU632_RS00700 0.24 +0.3
147,535 + LU632_RS00700 0.24 +0.3
147,536 - LU632_RS00700 0.24 +0.1
147,682 - LU632_RS00700 0.29 +0.3
147,682 - LU632_RS00700 0.29 -0.1
147,717 + LU632_RS00700 0.31 -1.1
147,718 - LU632_RS00700 0.31 -0.1
147,754 - LU632_RS00700 0.32 -2.2
147,782 - LU632_RS00700 0.33 -1.5
147,788 + LU632_RS00700 0.33 -0.7
147,789 - LU632_RS00700 0.34 +0.8
147,844 + LU632_RS00700 0.36 -0.7
147,845 - LU632_RS00700 0.36 +0.0
147,845 - LU632_RS00700 0.36 -0.7
147,845 - LU632_RS00700 0.36 -0.8
148,023 + LU632_RS00700 0.42 +0.3
148,032 + LU632_RS00700 0.43 -0.4
148,074 - LU632_RS00700 0.44 +0.3
148,104 - LU632_RS00700 0.45 -0.1
148,111 - LU632_RS00700 0.46 +0.7
148,171 - LU632_RS00700 0.48 -1.3
148,171 - LU632_RS00700 0.48 -0.6
148,174 + LU632_RS00700 0.48 -2.1
148,174 + LU632_RS00700 0.48 +0.0
148,174 + LU632_RS00700 0.48 -0.7
148,175 - LU632_RS00700 0.48 +0.7
148,175 - LU632_RS00700 0.48 -0.0
148,175 - LU632_RS00700 0.48 +1.3
148,175 - LU632_RS00700 0.48 +0.7
148,177 - LU632_RS00700 0.48 +2.3
148,183 - LU632_RS00700 0.48 -1.6
148,191 + LU632_RS00700 0.49 -0.8
148,200 - LU632_RS00700 0.49 -1.5
148,243 - LU632_RS00700 0.51 +0.3
148,258 - LU632_RS00700 0.51 +0.3
148,259 + LU632_RS00700 0.51 +1.2
148,259 + LU632_RS00700 0.51 -1.4
148,259 + LU632_RS00700 0.51 +0.6
148,259 + LU632_RS00700 0.51 +0.1
148,259 + LU632_RS00700 0.51 -0.1
148,261 + LU632_RS00700 0.51 +1.3
148,262 - LU632_RS00700 0.51 +3.0
148,262 - LU632_RS00700 0.51 +0.2
148,272 + LU632_RS00700 0.52 +0.2
148,277 - LU632_RS00700 0.52 -0.2
148,277 - LU632_RS00700 0.52 +0.1
148,277 - LU632_RS00700 0.52 -0.1
148,285 - LU632_RS00700 0.52 -0.9
148,338 + LU632_RS00700 0.54 -2.0
148,525 + LU632_RS00700 0.61 +0.5
148,527 + LU632_RS00700 0.62 +0.7
148,527 + LU632_RS00700 0.62 +0.0
148,550 - LU632_RS00700 0.62 -0.3
148,550 - LU632_RS00700 0.62 +0.0
148,648 + LU632_RS00700 0.66 -2.1
148,679 - LU632_RS00700 0.67 +0.1
148,680 + LU632_RS00700 0.67 +0.5
148,683 + LU632_RS00700 0.67 -0.2
148,684 - LU632_RS00700 0.67 +1.7
148,757 - LU632_RS00700 0.70 -0.4
148,759 - LU632_RS00700 0.70 +0.5
148,834 + LU632_RS00700 0.73 +1.9
148,889 + LU632_RS00700 0.75 -0.4
148,890 - LU632_RS00700 0.75 +0.3
148,928 + LU632_RS00700 0.77 -1.8
148,929 - LU632_RS00700 0.77 +0.1
148,929 - LU632_RS00700 0.77 -1.2
148,929 - LU632_RS00700 0.77 +1.1
148,929 - LU632_RS00700 0.77 +0.4
148,929 - LU632_RS00700 0.77 +0.8
148,932 + LU632_RS00700 0.77 -2.3
149,088 - LU632_RS00700 0.83 -0.7
149,166 + LU632_RS00700 0.86 -1.7
149,174 + LU632_RS00700 0.86 +0.5
149,174 + LU632_RS00700 0.86 +1.3
149,319 - +1.3
149,322 + +1.5
149,323 - -1.7
149,349 + -0.3
149,350 - +1.6
149,429 + +1.2
149,432 - -0.4
149,432 - -0.9
149,432 - +0.5
149,435 + -0.1
149,435 + +1.5
149,639 - LU632_RS00705 0.19 +1.5
149,664 + LU632_RS00705 0.23 -0.1
149,694 - LU632_RS00705 0.28 -0.5
149,787 - LU632_RS00705 0.44 +0.8
150,021 + LU632_RS00705 0.85 -0.7
150,033 + LU632_RS00705 0.87 +1.0
150,299 + tssB LU632_RS00710 0.12 +1.0
150,374 + tssB LU632_RS00710 0.26 +1.1

Or see this region's nucleotide sequence