Experiment: plant=Melon; plant sample=M4; plant location=P2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS00235 and LU632_RS00240 are separated by 105 nucleotides LU632_RS00240 and eptB are separated by 277 nucleotides eptB and cirA are separated by 94 nucleotides
LU632_RS00235: LU632_RS00235 - MarR family transcriptional regulator, at 44,944 to 45,402
_RS00235
LU632_RS00240: LU632_RS00240 - organic hydroperoxide resistance protein, at 45,508 to 45,936
_RS00240
LU632_RS00245: eptB - 'kdo(2)-lipid A phosphoethanolamine 7''-transferase' pseudo=_no_value transl_table=11, at 46,214 to 47,913
eptB
LU632_RS00250: cirA - catecholate siderophore receptor CirA, at 48,008 to 49,969
cirA
Position (kb) 46
47
48 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 45.254 kb on + strand, within LU632_RS00235 at 45.487 kb on + strand at 45.488 kb on - strand at 45.527 kb on + strand at 45.527 kb on + strand at 45.528 kb on - strand at 45.529 kb on + strand at 45.612 kb on - strand, within LU632_RS00240 at 45.644 kb on + strand, within LU632_RS00240 at 45.648 kb on + strand, within LU632_RS00240 at 45.733 kb on - strand, within LU632_RS00240 at 45.751 kb on - strand, within LU632_RS00240 at 45.813 kb on + strand, within LU632_RS00240 at 45.814 kb on - strand, within LU632_RS00240 at 45.814 kb on - strand, within LU632_RS00240 at 45.814 kb on - strand, within LU632_RS00240 at 45.815 kb on + strand, within LU632_RS00240 at 45.815 kb on + strand, within LU632_RS00240 at 45.815 kb on + strand, within LU632_RS00240 at 45.815 kb on + strand, within LU632_RS00240 at 45.940 kb on + strand at 46.019 kb on + strand at 46.019 kb on + strand at 46.038 kb on + strand at 46.041 kb on + strand at 46.051 kb on + strand at 46.110 kb on - strand at 46.123 kb on + strand at 46.180 kb on + strand at 46.180 kb on + strand at 46.220 kb on + strand at 46.221 kb on - strand at 46.224 kb on + strand at 46.268 kb on + strand at 46.268 kb on + strand at 46.438 kb on - strand, within eptB at 46.480 kb on + strand, within eptB at 46.480 kb on + strand, within eptB at 46.483 kb on + strand, within eptB at 46.483 kb on + strand, within eptB at 46.484 kb on - strand, within eptB at 46.484 kb on - strand, within eptB at 46.484 kb on - strand, within eptB at 46.484 kb on - strand, within eptB at 46.484 kb on - strand, within eptB at 46.484 kb on - strand, within eptB at 46.484 kb on - strand, within eptB at 46.484 kb on - strand, within eptB at 46.484 kb on - strand, within eptB at 46.573 kb on + strand, within eptB at 46.620 kb on - strand, within eptB at 46.762 kb on - strand, within eptB at 46.782 kb on + strand, within eptB at 46.793 kb on - strand, within eptB at 46.823 kb on - strand, within eptB at 46.857 kb on - strand, within eptB at 46.864 kb on + strand, within eptB at 46.864 kb on + strand, within eptB at 46.867 kb on - strand, within eptB at 46.927 kb on + strand, within eptB at 46.927 kb on + strand, within eptB at 46.954 kb on - strand, within eptB at 46.954 kb on - strand, within eptB at 46.957 kb on + strand, within eptB at 46.957 kb on + strand, within eptB at 46.958 kb on - strand, within eptB at 46.958 kb on - strand, within eptB at 46.958 kb on - strand, within eptB at 46.958 kb on - strand, within eptB at 46.998 kb on + strand, within eptB at 47.034 kb on + strand, within eptB at 47.034 kb on + strand, within eptB at 47.035 kb on - strand, within eptB at 47.035 kb on - strand, within eptB at 47.035 kb on - strand, within eptB at 47.112 kb on + strand, within eptB at 47.112 kb on + strand, within eptB at 47.112 kb on + strand, within eptB at 47.113 kb on - strand, within eptB at 47.160 kb on - strand, within eptB at 47.202 kb on + strand, within eptB at 47.242 kb on + strand, within eptB at 47.266 kb on + strand, within eptB at 47.267 kb on - strand, within eptB at 47.285 kb on + strand, within eptB at 47.285 kb on + strand, within eptB at 47.325 kb on + strand, within eptB at 47.413 kb on + strand, within eptB at 47.413 kb on + strand, within eptB at 47.414 kb on - strand, within eptB at 47.414 kb on - strand, within eptB at 47.443 kb on + strand, within eptB at 47.517 kb on + strand, within eptB at 47.518 kb on - strand, within eptB at 47.531 kb on - strand, within eptB at 47.575 kb on - strand, within eptB at 47.644 kb on - strand, within eptB at 47.706 kb on + strand, within eptB at 47.710 kb on + strand, within eptB at 47.711 kb on - strand, within eptB at 47.805 kb on + strand at 47.806 kb on - strand at 47.806 kb on - strand at 47.806 kb on - strand at 47.824 kb on + strand at 47.825 kb on - strand at 47.826 kb on + strand at 47.827 kb on - strand at 47.833 kb on - strand at 47.833 kb on - strand at 47.947 kb on + strand at 48.064 kb on - strand at 48.064 kb on - strand at 48.164 kb on - strand at 48.216 kb on + strand, within cirA at 48.216 kb on + strand, within cirA at 48.307 kb on + strand, within cirA at 48.342 kb on + strand, within cirA at 48.343 kb on - strand, within cirA at 48.343 kb on - strand, within cirA at 48.347 kb on - strand, within cirA at 48.348 kb on + strand, within cirA at 48.349 kb on - strand, within cirA at 48.432 kb on + strand, within cirA at 48.432 kb on + strand, within cirA at 48.432 kb on + strand, within cirA at 48.432 kb on + strand, within cirA at 48.433 kb on - strand, within cirA at 48.433 kb on - strand, within cirA at 48.591 kb on + strand, within cirA at 48.591 kb on + strand, within cirA at 48.652 kb on + strand, within cirA at 48.801 kb on + strand, within cirA
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Melon; plant sample=M4; plant location=P2 remove 45,254 + LU632_RS00235 0.68 -0.6 45,487 + -1.0 45,488 - -0.3 45,527 + -0.1 45,527 + +0.4 45,528 - +1.0 45,529 + +3.9 45,612 - LU632_RS00240 0.24 -0.6 45,644 + LU632_RS00240 0.32 -0.9 45,648 + LU632_RS00240 0.33 -0.1 45,733 - LU632_RS00240 0.52 +1.3 45,751 - LU632_RS00240 0.57 +2.4 45,813 + LU632_RS00240 0.71 +1.3 45,814 - LU632_RS00240 0.71 -0.1 45,814 - LU632_RS00240 0.71 -0.7 45,814 - LU632_RS00240 0.71 +0.5 45,815 + LU632_RS00240 0.72 -0.1 45,815 + LU632_RS00240 0.72 +2.6 45,815 + LU632_RS00240 0.72 -0.4 45,815 + LU632_RS00240 0.72 -0.2 45,940 + -1.4 46,019 + +1.4 46,019 + +1.3 46,038 + +2.1 46,041 + -1.2 46,051 + -0.1 46,110 - +0.5 46,123 + -1.0 46,180 + +0.1 46,180 + -0.1 46,220 + -0.4 46,221 - -0.8 46,224 + -0.0 46,268 + -1.1 46,268 + -0.4 46,438 - eptB LU632_RS00245 0.13 -1.1 46,480 + eptB LU632_RS00245 0.16 +0.9 46,480 + eptB LU632_RS00245 0.16 +0.7 46,483 + eptB LU632_RS00245 0.16 -0.5 46,483 + eptB LU632_RS00245 0.16 -0.4 46,484 - eptB LU632_RS00245 0.16 -2.0 46,484 - eptB LU632_RS00245 0.16 -0.9 46,484 - eptB LU632_RS00245 0.16 -0.4 46,484 - eptB LU632_RS00245 0.16 +0.2 46,484 - eptB LU632_RS00245 0.16 -0.1 46,484 - eptB LU632_RS00245 0.16 -1.1 46,484 - eptB LU632_RS00245 0.16 -0.5 46,484 - eptB LU632_RS00245 0.16 -0.8 46,484 - eptB LU632_RS00245 0.16 +0.4 46,573 + eptB LU632_RS00245 0.21 -0.3 46,620 - eptB LU632_RS00245 0.24 +0.2 46,762 - eptB LU632_RS00245 0.32 +1.7 46,782 + eptB LU632_RS00245 0.33 +0.7 46,793 - eptB LU632_RS00245 0.34 +0.7 46,823 - eptB LU632_RS00245 0.36 -0.1 46,857 - eptB LU632_RS00245 0.38 -0.1 46,864 + eptB LU632_RS00245 0.38 +3.5 46,864 + eptB LU632_RS00245 0.38 +0.4 46,867 - eptB LU632_RS00245 0.38 -0.4 46,927 + eptB LU632_RS00245 0.42 +1.0 46,927 + eptB LU632_RS00245 0.42 -0.4 46,954 - eptB LU632_RS00245 0.44 -1.1 46,954 - eptB LU632_RS00245 0.44 -0.8 46,957 + eptB LU632_RS00245 0.44 +1.3 46,957 + eptB LU632_RS00245 0.44 -0.6 46,958 - eptB LU632_RS00245 0.44 +1.3 46,958 - eptB LU632_RS00245 0.44 -0.7 46,958 - eptB LU632_RS00245 0.44 -1.5 46,958 - eptB LU632_RS00245 0.44 -0.1 46,998 + eptB LU632_RS00245 0.46 +1.3 47,034 + eptB LU632_RS00245 0.48 -0.1 47,034 + eptB LU632_RS00245 0.48 +0.1 47,035 - eptB LU632_RS00245 0.48 -0.1 47,035 - eptB LU632_RS00245 0.48 +0.9 47,035 - eptB LU632_RS00245 0.48 +0.1 47,112 + eptB LU632_RS00245 0.53 -1.3 47,112 + eptB LU632_RS00245 0.53 +1.1 47,112 + eptB LU632_RS00245 0.53 -0.5 47,113 - eptB LU632_RS00245 0.53 -1.3 47,160 - eptB LU632_RS00245 0.56 -0.7 47,202 + eptB LU632_RS00245 0.58 +0.8 47,242 + eptB LU632_RS00245 0.60 -1.2 47,266 + eptB LU632_RS00245 0.62 -0.5 47,267 - eptB LU632_RS00245 0.62 +1.6 47,285 + eptB LU632_RS00245 0.63 -1.1 47,285 + eptB LU632_RS00245 0.63 +0.3 47,325 + eptB LU632_RS00245 0.65 -0.3 47,413 + eptB LU632_RS00245 0.71 -0.5 47,413 + eptB LU632_RS00245 0.71 -0.9 47,414 - eptB LU632_RS00245 0.71 -0.3 47,414 - eptB LU632_RS00245 0.71 +1.4 47,443 + eptB LU632_RS00245 0.72 +0.3 47,517 + eptB LU632_RS00245 0.77 +0.0 47,518 - eptB LU632_RS00245 0.77 -0.8 47,531 - eptB LU632_RS00245 0.77 +0.1 47,575 - eptB LU632_RS00245 0.80 -0.8 47,644 - eptB LU632_RS00245 0.84 +0.5 47,706 + eptB LU632_RS00245 0.88 -0.5 47,710 + eptB LU632_RS00245 0.88 +1.3 47,711 - eptB LU632_RS00245 0.88 +0.7 47,805 + -0.2 47,806 - +0.4 47,806 - +0.4 47,806 - -1.5 47,824 + -0.5 47,825 - -0.8 47,826 + -2.1 47,827 - -0.2 47,833 - +0.5 47,833 - +1.3 47,947 + -1.9 48,064 - -1.1 48,064 - +0.7 48,164 - +2.3 48,216 + cirA LU632_RS00250 0.11 -0.5 48,216 + cirA LU632_RS00250 0.11 -0.8 48,307 + cirA LU632_RS00250 0.15 -0.3 48,342 + cirA LU632_RS00250 0.17 -0.7 48,343 - cirA LU632_RS00250 0.17 -0.7 48,343 - cirA LU632_RS00250 0.17 +0.7 48,347 - cirA LU632_RS00250 0.17 -0.3 48,348 + cirA LU632_RS00250 0.17 -0.9 48,349 - cirA LU632_RS00250 0.17 +0.2 48,432 + cirA LU632_RS00250 0.22 -0.1 48,432 + cirA LU632_RS00250 0.22 -0.9 48,432 + cirA LU632_RS00250 0.22 +0.2 48,432 + cirA LU632_RS00250 0.22 +0.9 48,433 - cirA LU632_RS00250 0.22 -0.7 48,433 - cirA LU632_RS00250 0.22 +0.7 48,591 + cirA LU632_RS00250 0.30 +1.3 48,591 + cirA LU632_RS00250 0.30 -1.7 48,652 + cirA LU632_RS00250 0.33 -0.8 48,801 + cirA LU632_RS00250 0.40 -2.0
Or see this region's nucleotide sequence