Strain Fitness in Erwinia amylovora T8 around OLJFJH_04200

Experiment: Matrix:KB soft agar;Phage:inactivated cocktail;Temp:28;Samp:31-7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_04195 and OLJFJH_04200 are separated by 12 nucleotidesOLJFJH_04200 and OLJFJH_04205 are separated by 97 nucleotidesOLJFJH_04205 and OLJFJH_04210 overlap by 74 nucleotides OLJFJH_04195: OLJFJH_04195 - 4-alpha-glucanotransferase, at 801,713 to 803,782 _04195 OLJFJH_04200: OLJFJH_04200 - maltodextrin phosphorylase, at 803,795 to 806,197 _04200 OLJFJH_04205: OLJFJH_04205 - hypothetical protein, at 806,295 to 806,483 _04205 OLJFJH_04210: OLJFJH_04210 - DeoR/GlpR family transcriptional regulator, at 806,410 to 807,168 _04210 Position (kb) 803 804 805 806 807Strain fitness (log2 ratio) -2 -1 0 1 2 3at 802.818 kb on + strand, within OLJFJH_04195at 802.818 kb on + strand, within OLJFJH_04195at 802.891 kb on - strand, within OLJFJH_04195at 803.035 kb on - strand, within OLJFJH_04195at 803.035 kb on - strand, within OLJFJH_04195at 803.141 kb on + strand, within OLJFJH_04195at 803.141 kb on + strand, within OLJFJH_04195at 803.142 kb on - strand, within OLJFJH_04195at 803.142 kb on - strand, within OLJFJH_04195at 803.151 kb on + strand, within OLJFJH_04195at 803.151 kb on + strand, within OLJFJH_04195at 803.151 kb on + strand, within OLJFJH_04195at 803.151 kb on + strand, within OLJFJH_04195at 803.151 kb on + strand, within OLJFJH_04195at 803.151 kb on + strand, within OLJFJH_04195at 803.151 kb on + strand, within OLJFJH_04195at 803.151 kb on + strand, within OLJFJH_04195at 803.151 kb on + strand, within OLJFJH_04195at 803.152 kb on - strand, within OLJFJH_04195at 803.152 kb on - strand, within OLJFJH_04195at 803.152 kb on - strand, within OLJFJH_04195at 803.187 kb on + strand, within OLJFJH_04195at 803.187 kb on + strand, within OLJFJH_04195at 803.217 kb on + strand, within OLJFJH_04195at 803.277 kb on - strand, within OLJFJH_04195at 803.335 kb on + strand, within OLJFJH_04195at 803.336 kb on - strand, within OLJFJH_04195at 803.337 kb on + strand, within OLJFJH_04195at 803.394 kb on + strand, within OLJFJH_04195at 803.394 kb on + strand, within OLJFJH_04195at 803.395 kb on - strand, within OLJFJH_04195at 803.498 kb on + strand, within OLJFJH_04195at 803.499 kb on - strand, within OLJFJH_04195at 803.499 kb on - strand, within OLJFJH_04195at 803.514 kb on - strand, within OLJFJH_04195at 803.534 kb on - strand, within OLJFJH_04195at 803.618 kb on - strandat 803.618 kb on - strandat 803.774 kb on + strandat 803.776 kb on + strandat 803.777 kb on - strandat 803.925 kb on - strandat 803.946 kb on + strandat 803.947 kb on - strandat 804.166 kb on + strand, within OLJFJH_04200at 804.167 kb on - strand, within OLJFJH_04200at 804.254 kb on - strand, within OLJFJH_04200at 804.276 kb on + strand, within OLJFJH_04200at 804.277 kb on - strand, within OLJFJH_04200at 804.340 kb on + strand, within OLJFJH_04200at 804.415 kb on + strand, within OLJFJH_04200at 804.415 kb on + strand, within OLJFJH_04200at 804.415 kb on + strand, within OLJFJH_04200at 804.416 kb on - strand, within OLJFJH_04200at 804.426 kb on + strand, within OLJFJH_04200at 804.427 kb on - strand, within OLJFJH_04200at 804.427 kb on - strand, within OLJFJH_04200at 804.427 kb on - strand, within OLJFJH_04200at 804.434 kb on - strand, within OLJFJH_04200at 804.447 kb on + strand, within OLJFJH_04200at 804.447 kb on + strand, within OLJFJH_04200at 804.448 kb on - strand, within OLJFJH_04200at 804.451 kb on - strand, within OLJFJH_04200at 804.528 kb on + strand, within OLJFJH_04200at 804.571 kb on - strand, within OLJFJH_04200at 804.586 kb on + strand, within OLJFJH_04200at 804.645 kb on + strand, within OLJFJH_04200at 804.645 kb on + strand, within OLJFJH_04200at 804.646 kb on - strand, within OLJFJH_04200at 804.646 kb on - strand, within OLJFJH_04200at 804.706 kb on + strand, within OLJFJH_04200at 804.707 kb on - strand, within OLJFJH_04200at 804.829 kb on + strand, within OLJFJH_04200at 804.832 kb on + strand, within OLJFJH_04200at 804.876 kb on + strand, within OLJFJH_04200at 804.877 kb on - strand, within OLJFJH_04200at 804.979 kb on + strand, within OLJFJH_04200at 804.979 kb on + strand, within OLJFJH_04200at 805.015 kb on + strand, within OLJFJH_04200at 805.049 kb on - strand, within OLJFJH_04200at 805.156 kb on + strand, within OLJFJH_04200at 805.159 kb on - strand, within OLJFJH_04200at 805.269 kb on - strand, within OLJFJH_04200at 805.269 kb on - strand, within OLJFJH_04200at 805.269 kb on - strand, within OLJFJH_04200at 805.366 kb on - strand, within OLJFJH_04200at 805.366 kb on - strand, within OLJFJH_04200at 805.541 kb on + strand, within OLJFJH_04200at 805.718 kb on - strand, within OLJFJH_04200at 805.718 kb on - strand, within OLJFJH_04200at 805.776 kb on + strand, within OLJFJH_04200at 805.776 kb on + strand, within OLJFJH_04200at 805.776 kb on + strand, within OLJFJH_04200at 805.776 kb on + strand, within OLJFJH_04200at 805.777 kb on - strand, within OLJFJH_04200at 805.780 kb on + strand, within OLJFJH_04200at 805.966 kb on + strandat 805.970 kb on - strandat 806.005 kb on + strandat 806.005 kb on + strandat 806.005 kb on + strandat 806.006 kb on - strandat 806.006 kb on - strandat 806.007 kb on + strandat 806.007 kb on + strandat 806.007 kb on + strandat 806.007 kb on + strandat 806.007 kb on + strandat 806.007 kb on + strandat 806.007 kb on + strandat 806.007 kb on + strandat 806.008 kb on - strandat 806.008 kb on - strandat 806.008 kb on - strandat 806.008 kb on - strandat 806.011 kb on + strandat 806.011 kb on + strandat 806.176 kb on + strandat 806.251 kb on - strandat 806.251 kb on - strandat 806.257 kb on - strandat 806.691 kb on + strand, within OLJFJH_04210at 806.691 kb on + strand, within OLJFJH_04210at 806.692 kb on - strand, within OLJFJH_04210at 806.692 kb on - strand, within OLJFJH_04210at 806.693 kb on + strand, within OLJFJH_04210at 806.693 kb on + strand, within OLJFJH_04210at 806.693 kb on + strand, within OLJFJH_04210at 806.694 kb on - strand, within OLJFJH_04210at 806.694 kb on - strand, within OLJFJH_04210at 806.694 kb on - strand, within OLJFJH_04210at 806.826 kb on + strand, within OLJFJH_04210at 806.827 kb on - strand, within OLJFJH_04210at 806.881 kb on - strand, within OLJFJH_04210at 807.049 kb on + strand, within OLJFJH_04210at 807.050 kb on - strand, within OLJFJH_04210at 807.050 kb on - strand, within OLJFJH_04210at 807.113 kb on + strandat 807.114 kb on - strandat 807.114 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:KB soft agar;Phage:inactivated cocktail;Temp:28;Samp:31-7
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802,818 + OLJFJH_04195 0.53 -0.8
802,818 + OLJFJH_04195 0.53 +0.4
802,891 - OLJFJH_04195 0.57 +0.0
803,035 - OLJFJH_04195 0.64 -0.1
803,035 - OLJFJH_04195 0.64 -1.3
803,141 + OLJFJH_04195 0.69 +0.4
803,141 + OLJFJH_04195 0.69 -0.4
803,142 - OLJFJH_04195 0.69 +0.4
803,142 - OLJFJH_04195 0.69 +0.8
803,151 + OLJFJH_04195 0.69 -0.3
803,151 + OLJFJH_04195 0.69 -0.1
803,151 + OLJFJH_04195 0.69 +0.1
803,151 + OLJFJH_04195 0.69 +0.2
803,151 + OLJFJH_04195 0.69 +1.4
803,151 + OLJFJH_04195 0.69 +0.2
803,151 + OLJFJH_04195 0.69 -1.8
803,151 + OLJFJH_04195 0.69 +0.3
803,151 + OLJFJH_04195 0.69 +0.2
803,152 - OLJFJH_04195 0.70 +0.1
803,152 - OLJFJH_04195 0.70 -0.0
803,152 - OLJFJH_04195 0.70 -0.1
803,187 + OLJFJH_04195 0.71 +0.2
803,187 + OLJFJH_04195 0.71 -0.4
803,217 + OLJFJH_04195 0.73 -0.2
803,277 - OLJFJH_04195 0.76 +0.2
803,335 + OLJFJH_04195 0.78 +1.1
803,336 - OLJFJH_04195 0.78 -0.0
803,337 + OLJFJH_04195 0.78 -2.2
803,394 + OLJFJH_04195 0.81 +2.8
803,394 + OLJFJH_04195 0.81 -0.3
803,395 - OLJFJH_04195 0.81 +0.1
803,498 + OLJFJH_04195 0.86 +0.0
803,499 - OLJFJH_04195 0.86 -0.1
803,499 - OLJFJH_04195 0.86 -1.8
803,514 - OLJFJH_04195 0.87 -0.2
803,534 - OLJFJH_04195 0.88 -0.2
803,618 - -1.0
803,618 - -0.0
803,774 + +1.7
803,776 + +0.3
803,777 - -0.2
803,925 - -0.3
803,946 + +0.5
803,947 - +0.0
804,166 + OLJFJH_04200 0.15 -0.3
804,167 - OLJFJH_04200 0.15 -0.1
804,254 - OLJFJH_04200 0.19 -0.5
804,276 + OLJFJH_04200 0.20 -0.0
804,277 - OLJFJH_04200 0.20 +0.3
804,340 + OLJFJH_04200 0.23 -1.0
804,415 + OLJFJH_04200 0.26 -0.3
804,415 + OLJFJH_04200 0.26 -0.2
804,415 + OLJFJH_04200 0.26 -0.6
804,416 - OLJFJH_04200 0.26 +0.6
804,426 + OLJFJH_04200 0.26 -0.6
804,427 - OLJFJH_04200 0.26 +0.0
804,427 - OLJFJH_04200 0.26 -2.2
804,427 - OLJFJH_04200 0.26 -0.0
804,434 - OLJFJH_04200 0.27 -0.5
804,447 + OLJFJH_04200 0.27 -0.9
804,447 + OLJFJH_04200 0.27 +0.2
804,448 - OLJFJH_04200 0.27 -0.8
804,451 - OLJFJH_04200 0.27 -0.3
804,528 + OLJFJH_04200 0.31 +0.9
804,571 - OLJFJH_04200 0.32 -0.6
804,586 + OLJFJH_04200 0.33 -0.8
804,645 + OLJFJH_04200 0.35 -0.2
804,645 + OLJFJH_04200 0.35 +0.1
804,646 - OLJFJH_04200 0.35 -0.3
804,646 - OLJFJH_04200 0.35 -0.0
804,706 + OLJFJH_04200 0.38 -0.6
804,707 - OLJFJH_04200 0.38 -0.2
804,829 + OLJFJH_04200 0.43 -0.4
804,832 + OLJFJH_04200 0.43 -1.2
804,876 + OLJFJH_04200 0.45 +0.2
804,877 - OLJFJH_04200 0.45 +0.6
804,979 + OLJFJH_04200 0.49 -0.4
804,979 + OLJFJH_04200 0.49 +0.9
805,015 + OLJFJH_04200 0.51 -1.1
805,049 - OLJFJH_04200 0.52 -0.2
805,156 + OLJFJH_04200 0.57 +1.9
805,159 - OLJFJH_04200 0.57 +0.1
805,269 - OLJFJH_04200 0.61 +0.4
805,269 - OLJFJH_04200 0.61 -0.4
805,269 - OLJFJH_04200 0.61 +2.5
805,366 - OLJFJH_04200 0.65 -1.1
805,366 - OLJFJH_04200 0.65 -0.0
805,541 + OLJFJH_04200 0.73 -0.3
805,718 - OLJFJH_04200 0.80 +0.3
805,718 - OLJFJH_04200 0.80 +0.8
805,776 + OLJFJH_04200 0.82 +0.0
805,776 + OLJFJH_04200 0.82 -1.1
805,776 + OLJFJH_04200 0.82 +0.3
805,776 + OLJFJH_04200 0.82 +0.1
805,777 - OLJFJH_04200 0.82 +0.1
805,780 + OLJFJH_04200 0.83 +0.1
805,966 + +0.7
805,970 - +0.2
806,005 + -0.4
806,005 + -0.1
806,005 + +0.3
806,006 - -0.1
806,006 - -0.9
806,007 + +0.0
806,007 + +0.1
806,007 + -0.1
806,007 + +0.4
806,007 + -0.6
806,007 + -0.1
806,007 + -0.2
806,007 + -0.8
806,008 - -0.8
806,008 - +0.4
806,008 - +0.2
806,008 - -1.1
806,011 + +0.3
806,011 + -0.4
806,176 + -0.1
806,251 - -0.5
806,251 - +0.5
806,257 - +0.2
806,691 + OLJFJH_04210 0.37 +0.3
806,691 + OLJFJH_04210 0.37 +0.9
806,692 - OLJFJH_04210 0.37 +0.1
806,692 - OLJFJH_04210 0.37 -1.7
806,693 + OLJFJH_04210 0.37 -0.5
806,693 + OLJFJH_04210 0.37 +0.7
806,693 + OLJFJH_04210 0.37 +1.2
806,694 - OLJFJH_04210 0.37 +0.2
806,694 - OLJFJH_04210 0.37 -0.5
806,694 - OLJFJH_04210 0.37 -0.1
806,826 + OLJFJH_04210 0.55 -0.1
806,827 - OLJFJH_04210 0.55 -1.8
806,881 - OLJFJH_04210 0.62 +0.4
807,049 + OLJFJH_04210 0.84 +0.1
807,050 - OLJFJH_04210 0.84 -0.3
807,050 - OLJFJH_04210 0.84 +0.1
807,113 + -1.1
807,114 - -0.1
807,114 - -1.1

Or see this region's nucleotide sequence