Strain Fitness in Erwinia amylovora T8 around OLJFJH_06295

Experiment: Matrix:KB soft agar;Phage:inactivated cocktail;Temp:28;Samp:31-6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_06290 and OLJFJH_06295 are separated by 4 nucleotidesOLJFJH_06295 and OLJFJH_06300 overlap by 4 nucleotides OLJFJH_06290: OLJFJH_06290 - UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing), at 1,274,647 to 1,275,768 _06290 OLJFJH_06295: OLJFJH_06295 - UDP-N-acetyl-D-mannosamine dehydrogenase, at 1,275,773 to 1,277,035 _06295 OLJFJH_06300: OLJFJH_06300 - dTDP-glucose 4 6-dehydratase, at 1,277,032 to 1,278,120 _06300 Position (kb) 1275 1276 1277 1278Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6 7 8 9 10at 1274.820 kb on + strand, within OLJFJH_06290at 1274.821 kb on - strand, within OLJFJH_06290at 1274.821 kb on - strand, within OLJFJH_06290at 1274.823 kb on + strand, within OLJFJH_06290at 1274.823 kb on + strand, within OLJFJH_06290at 1274.823 kb on + strand, within OLJFJH_06290at 1274.824 kb on - strand, within OLJFJH_06290at 1274.824 kb on - strand, within OLJFJH_06290at 1274.824 kb on - strand, within OLJFJH_06290at 1274.824 kb on - strand, within OLJFJH_06290at 1274.889 kb on - strand, within OLJFJH_06290at 1274.969 kb on - strand, within OLJFJH_06290at 1274.969 kb on - strand, within OLJFJH_06290at 1275.076 kb on + strand, within OLJFJH_06290at 1275.129 kb on - strand, within OLJFJH_06290at 1275.129 kb on - strand, within OLJFJH_06290at 1275.253 kb on - strand, within OLJFJH_06290at 1275.318 kb on + strand, within OLJFJH_06290at 1275.319 kb on - strand, within OLJFJH_06290at 1275.319 kb on - strand, within OLJFJH_06290at 1275.319 kb on - strand, within OLJFJH_06290at 1275.319 kb on - strand, within OLJFJH_06290at 1275.381 kb on - strand, within OLJFJH_06290at 1275.387 kb on + strand, within OLJFJH_06290at 1275.388 kb on - strand, within OLJFJH_06290at 1275.388 kb on - strand, within OLJFJH_06290at 1275.447 kb on + strand, within OLJFJH_06290at 1275.463 kb on + strand, within OLJFJH_06290at 1275.463 kb on + strand, within OLJFJH_06290at 1275.705 kb on + strandat 1275.712 kb on + strandat 1275.739 kb on - strandat 1275.809 kb on + strandat 1275.810 kb on - strandat 1275.810 kb on - strandat 1275.865 kb on + strandat 1275.871 kb on + strandat 1276.061 kb on + strand, within OLJFJH_06295at 1276.062 kb on - strand, within OLJFJH_06295at 1276.239 kb on - strand, within OLJFJH_06295at 1276.269 kb on + strand, within OLJFJH_06295at 1276.270 kb on - strand, within OLJFJH_06295at 1276.346 kb on + strand, within OLJFJH_06295at 1276.346 kb on + strand, within OLJFJH_06295at 1276.347 kb on + strand, within OLJFJH_06295at 1276.347 kb on - strand, within OLJFJH_06295at 1276.405 kb on + strand, within OLJFJH_06295at 1276.406 kb on - strand, within OLJFJH_06295at 1276.406 kb on - strand, within OLJFJH_06295at 1276.471 kb on + strand, within OLJFJH_06295at 1276.591 kb on + strand, within OLJFJH_06295at 1276.680 kb on + strand, within OLJFJH_06295at 1276.681 kb on - strand, within OLJFJH_06295at 1276.681 kb on - strand, within OLJFJH_06295at 1276.885 kb on - strand, within OLJFJH_06295at 1276.969 kb on + strandat 1277.010 kb on + strandat 1277.011 kb on - strandat 1277.011 kb on - strandat 1277.014 kb on + strandat 1277.014 kb on + strandat 1277.014 kb on + strandat 1277.041 kb on - strandat 1277.141 kb on - strand, within OLJFJH_06300at 1277.149 kb on - strand, within OLJFJH_06300at 1277.191 kb on - strand, within OLJFJH_06300at 1277.266 kb on - strand, within OLJFJH_06300at 1277.301 kb on + strand, within OLJFJH_06300at 1277.301 kb on + strand, within OLJFJH_06300at 1277.374 kb on + strand, within OLJFJH_06300at 1277.424 kb on + strand, within OLJFJH_06300at 1277.425 kb on - strand, within OLJFJH_06300at 1277.492 kb on - strand, within OLJFJH_06300at 1277.540 kb on + strand, within OLJFJH_06300at 1277.541 kb on - strand, within OLJFJH_06300at 1277.541 kb on - strand, within OLJFJH_06300at 1277.559 kb on + strand, within OLJFJH_06300at 1277.559 kb on + strand, within OLJFJH_06300at 1277.559 kb on + strand, within OLJFJH_06300at 1277.559 kb on + strand, within OLJFJH_06300at 1277.560 kb on - strand, within OLJFJH_06300at 1277.560 kb on - strand, within OLJFJH_06300at 1277.560 kb on - strand, within OLJFJH_06300at 1277.579 kb on + strand, within OLJFJH_06300at 1277.579 kb on + strand, within OLJFJH_06300at 1277.599 kb on - strand, within OLJFJH_06300at 1277.599 kb on - strand, within OLJFJH_06300at 1277.713 kb on + strand, within OLJFJH_06300at 1277.714 kb on - strand, within OLJFJH_06300at 1277.714 kb on - strand, within OLJFJH_06300at 1277.714 kb on - strand, within OLJFJH_06300at 1277.741 kb on - strand, within OLJFJH_06300at 1277.760 kb on + strand, within OLJFJH_06300at 1277.776 kb on + strand, within OLJFJH_06300at 1277.776 kb on + strand, within OLJFJH_06300at 1277.776 kb on + strand, within OLJFJH_06300at 1277.777 kb on - strand, within OLJFJH_06300at 1277.777 kb on - strand, within OLJFJH_06300at 1277.819 kb on + strand, within OLJFJH_06300at 1277.820 kb on - strand, within OLJFJH_06300at 1277.932 kb on + strand, within OLJFJH_06300at 1278.006 kb on + strand, within OLJFJH_06300at 1278.007 kb on - strand, within OLJFJH_06300at 1278.025 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:KB soft agar;Phage:inactivated cocktail;Temp:28;Samp:31-6
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1,274,820 + OLJFJH_06290 0.15 +7.7
1,274,821 - OLJFJH_06290 0.16 +2.3
1,274,821 - OLJFJH_06290 0.16 -0.8
1,274,823 + OLJFJH_06290 0.16 +2.1
1,274,823 + OLJFJH_06290 0.16 +3.3
1,274,823 + OLJFJH_06290 0.16 +7.3
1,274,824 - OLJFJH_06290 0.16 +1.6
1,274,824 - OLJFJH_06290 0.16 +1.2
1,274,824 - OLJFJH_06290 0.16 -2.0
1,274,824 - OLJFJH_06290 0.16 +0.7
1,274,889 - OLJFJH_06290 0.22 +0.9
1,274,969 - OLJFJH_06290 0.29 -1.4
1,274,969 - OLJFJH_06290 0.29 -1.3
1,275,076 + OLJFJH_06290 0.38 -1.6
1,275,129 - OLJFJH_06290 0.43 -1.1
1,275,129 - OLJFJH_06290 0.43 -0.9
1,275,253 - OLJFJH_06290 0.54 +1.5
1,275,318 + OLJFJH_06290 0.60 +8.1
1,275,319 - OLJFJH_06290 0.60 -0.4
1,275,319 - OLJFJH_06290 0.60 +1.6
1,275,319 - OLJFJH_06290 0.60 -1.3
1,275,319 - OLJFJH_06290 0.60 -0.7
1,275,381 - OLJFJH_06290 0.65 +0.4
1,275,387 + OLJFJH_06290 0.66 +10.5
1,275,388 - OLJFJH_06290 0.66 -1.5
1,275,388 - OLJFJH_06290 0.66 +1.0
1,275,447 + OLJFJH_06290 0.71 +10.2
1,275,463 + OLJFJH_06290 0.73 +9.3
1,275,463 + OLJFJH_06290 0.73 +10.7
1,275,705 + +10.0
1,275,712 + +7.7
1,275,739 - -0.9
1,275,809 + +9.7
1,275,810 - -0.6
1,275,810 - +1.3
1,275,865 + +6.6
1,275,871 + +8.9
1,276,061 + OLJFJH_06295 0.23 +9.6
1,276,062 - OLJFJH_06295 0.23 +1.2
1,276,239 - OLJFJH_06295 0.37 -1.5
1,276,269 + OLJFJH_06295 0.39 +8.1
1,276,270 - OLJFJH_06295 0.39 +0.0
1,276,346 + OLJFJH_06295 0.45 +8.6
1,276,346 + OLJFJH_06295 0.45 +8.5
1,276,347 + OLJFJH_06295 0.45 +8.4
1,276,347 - OLJFJH_06295 0.45 +1.5
1,276,405 + OLJFJH_06295 0.50 +7.2
1,276,406 - OLJFJH_06295 0.50 +0.1
1,276,406 - OLJFJH_06295 0.50 +0.3
1,276,471 + OLJFJH_06295 0.55 +3.8
1,276,591 + OLJFJH_06295 0.65 +8.8
1,276,680 + OLJFJH_06295 0.72 +9.7
1,276,681 - OLJFJH_06295 0.72 -1.1
1,276,681 - OLJFJH_06295 0.72 -2.9
1,276,885 - OLJFJH_06295 0.88 +2.0
1,276,969 + +8.6
1,277,010 + +9.5
1,277,011 - -2.1
1,277,011 - +2.3
1,277,014 + +9.5
1,277,014 + +10.0
1,277,014 + +10.4
1,277,041 - -1.2
1,277,141 - OLJFJH_06300 0.10 -1.2
1,277,149 - OLJFJH_06300 0.11 +0.9
1,277,191 - OLJFJH_06300 0.15 +0.6
1,277,266 - OLJFJH_06300 0.21 -0.1
1,277,301 + OLJFJH_06300 0.25 +1.8
1,277,301 + OLJFJH_06300 0.25 -0.5
1,277,374 + OLJFJH_06300 0.31 -0.5
1,277,424 + OLJFJH_06300 0.36 +3.6
1,277,425 - OLJFJH_06300 0.36 +0.2
1,277,492 - OLJFJH_06300 0.42 -0.0
1,277,540 + OLJFJH_06300 0.47 -0.3
1,277,541 - OLJFJH_06300 0.47 -0.0
1,277,541 - OLJFJH_06300 0.47 +0.2
1,277,559 + OLJFJH_06300 0.48 -0.4
1,277,559 + OLJFJH_06300 0.48 -1.1
1,277,559 + OLJFJH_06300 0.48 -0.7
1,277,559 + OLJFJH_06300 0.48 -0.9
1,277,560 - OLJFJH_06300 0.48 -2.2
1,277,560 - OLJFJH_06300 0.48 -1.3
1,277,560 - OLJFJH_06300 0.48 -0.1
1,277,579 + OLJFJH_06300 0.50 -0.7
1,277,579 + OLJFJH_06300 0.50 +0.0
1,277,599 - OLJFJH_06300 0.52 -1.3
1,277,599 - OLJFJH_06300 0.52 +0.2
1,277,713 + OLJFJH_06300 0.63 +4.6
1,277,714 - OLJFJH_06300 0.63 +1.3
1,277,714 - OLJFJH_06300 0.63 -0.7
1,277,714 - OLJFJH_06300 0.63 -0.4
1,277,741 - OLJFJH_06300 0.65 -0.6
1,277,760 + OLJFJH_06300 0.67 +3.5
1,277,776 + OLJFJH_06300 0.68 +2.1
1,277,776 + OLJFJH_06300 0.68 +3.5
1,277,776 + OLJFJH_06300 0.68 +1.2
1,277,777 - OLJFJH_06300 0.68 -1.1
1,277,777 - OLJFJH_06300 0.68 -0.3
1,277,819 + OLJFJH_06300 0.72 +4.1
1,277,820 - OLJFJH_06300 0.72 +1.2
1,277,932 + OLJFJH_06300 0.83 +2.0
1,278,006 + OLJFJH_06300 0.89 +4.3
1,278,007 - OLJFJH_06300 0.90 +0.5
1,278,025 - +0.5

Or see this region's nucleotide sequence