Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS25725

Experiment: plant=Melon; plant sample=M2; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M2; plant location=P2
1,485	+		LU632_RS25710	0.82	-1.3
1,573	+				-0.0
1,633	+				+0.5
1,633	+				+1.3
1,633	+				-0.3
1,633	+				+0.1
1,633	+				-0.9
1,633	+				-1.2
1,633	+				-0.4
1,729	-				+3.5
1,751	+				+0.9
1,814	+		LU632_RS25715	0.17	-0.5
1,815	-		LU632_RS25715	0.18	-0.2
1,982	+		LU632_RS25715	0.83	-0.7
1,982	+		LU632_RS25715	0.83	-0.3
1,982	+		LU632_RS25715	0.83	+1.1
1,983	-		LU632_RS25715	0.84	+0.9
1,983	-		LU632_RS25715	0.84	-0.1
1,985	-		LU632_RS25715	0.84	+3.9
2,072	+				+0.3
2,072	+				-0.0
2,073	-				-1.7
2,085	+				+0.9
2,086	-				+0.3
2,653	-		LU632_RS25725	0.27	-0.1
2,700	-		LU632_RS25725	0.34	-1.0
2,705	+		LU632_RS25725	0.34	-0.8
2,840	-		LU632_RS25725	0.54	+0.9
2,961	-		LU632_RS25725	0.72	-1.8
2,961	-		LU632_RS25725	0.72	+0.5
3,173	-				+0.2
3,173	-				-0.1
3,270	-				+0.7
3,276	+				-1.0
3,295	+				-0.4
3,295	+				-0.1
3,295	+				+1.0
3,296	-				+0.4
3,306	+				-0.5
3,306	+				-0.1
3,306	+				+2.0
3,306	+				+1.5
3,306	+				-0.5
3,306	+				-1.3
3,307	-				+0.0
3,310	+				-0.1
3,310	+				+0.1
3,311	-				+0.7
3,315	+				+1.1
3,337	+				+1.6
3,359	+				+2.5
3,359	+				+0.5
3,363	+				-0.4
3,363	+				-1.5
3,386	+				+0.1
3,386	+				-0.8
3,386	+				-1.6
3,386	+				-0.2
3,387	-				+1.5
3,387	-				-0.8
3,387	-				-1.7
3,387	-				-0.4
3,387	-				+0.6
3,387	-				+1.5
3,388	+				-0.8
3,388	+				+1.5
3,388	+				+0.7
3,389	-				+0.9
3,389	-				-2.2
3,389	-				-0.3
3,389	-				+0.5
3,389	-				-0.8
3,394	+				-0.8
3,394	+				+1.0
3,395	-				-1.5
3,398	+				-0.4
3,399	-				-0.5
3,530	+		LU632_RS25730	0.13	+1.6
3,703	+		LU632_RS25730	0.30	+0.9
3,703	+		LU632_RS25730	0.30	+1.7
3,725	+		LU632_RS25730	0.33	+1.3
3,725	+		LU632_RS25730	0.33	-0.3
3,725	+		LU632_RS25730	0.33	+0.9
3,725	+		LU632_RS25730	0.33	+0.3
3,726	-		LU632_RS25730	0.33	+0.3
3,726	-		LU632_RS25730	0.33	+4.0
3,726	-		LU632_RS25730	0.33	+1.6
3,726	-		LU632_RS25730	0.33	+1.1
3,749	-		LU632_RS25730	0.35	-0.2
3,772	-		LU632_RS25730	0.38	-1.5
4,121	+		LU632_RS25730	0.73	-1.8
4,122	-		LU632_RS25730	0.73	-1.8