Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS25350

Experiment: plant=Melon; plant sample=M2; plant location=P2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS25340 and LU632_RS25345 are separated by 100 nucleotidesLU632_RS25345 and LU632_RS25350 are separated by 15 nucleotidesLU632_RS25350 and LU632_RS25355 are separated by 60 nucleotidesLU632_RS25355 and traO are separated by 2 nucleotides LU632_RS25340: LU632_RS25340 - hypothetical protein, at 3,612 to 4,055 _RS25340 LU632_RS25345: LU632_RS25345 - DotI/IcmL family type IV secretion protein, at 4,156 to 4,776 _RS25345 LU632_RS25350: LU632_RS25350 - hypothetical protein, at 4,792 to 5,073 _RS25350 LU632_RS25355: LU632_RS25355 - DotH/IcmK family type IV secretion protein, at 5,134 to 5,799 _RS25355 LU632_RS25360: traO - conjugal transfer protein TraO, at 5,802 to 7,061 traO Position (kb) 4 5 6Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 3.804 kb on - strand, within LU632_RS25340at 3.906 kb on + strand, within LU632_RS25340at 3.907 kb on - strand, within LU632_RS25340at 3.907 kb on - strand, within LU632_RS25340at 3.940 kb on - strand, within LU632_RS25340at 4.023 kb on - strandat 4.038 kb on + strandat 4.038 kb on + strandat 4.038 kb on + strandat 4.038 kb on + strandat 4.038 kb on + strandat 4.039 kb on - strandat 4.039 kb on - strandat 4.039 kb on - strandat 4.039 kb on - strandat 4.135 kb on + strandat 4.136 kb on - strandat 4.136 kb on - strandat 4.200 kb on + strandat 4.300 kb on + strand, within LU632_RS25345at 4.443 kb on - strand, within LU632_RS25345at 4.443 kb on - strand, within LU632_RS25345at 4.487 kb on - strand, within LU632_RS25345at 4.487 kb on - strand, within LU632_RS25345at 4.489 kb on + strand, within LU632_RS25345at 4.490 kb on - strand, within LU632_RS25345at 4.490 kb on - strand, within LU632_RS25345at 4.490 kb on - strand, within LU632_RS25345at 4.612 kb on + strand, within LU632_RS25345at 4.612 kb on + strand, within LU632_RS25345at 4.612 kb on + strand, within LU632_RS25345at 4.612 kb on + strand, within LU632_RS25345at 4.613 kb on - strand, within LU632_RS25345at 4.613 kb on - strand, within LU632_RS25345at 4.613 kb on - strand, within LU632_RS25345at 4.613 kb on - strand, within LU632_RS25345at 4.613 kb on - strand, within LU632_RS25345at 4.613 kb on - strand, within LU632_RS25345at 4.613 kb on - strand, within LU632_RS25345at 4.613 kb on - strand, within LU632_RS25345at 4.614 kb on + strand, within LU632_RS25345at 4.614 kb on + strand, within LU632_RS25345at 4.614 kb on + strand, within LU632_RS25345at 4.615 kb on - strand, within LU632_RS25345at 4.692 kb on + strand, within LU632_RS25345at 4.977 kb on + strand, within LU632_RS25350at 4.988 kb on + strand, within LU632_RS25350at 5.272 kb on + strand, within LU632_RS25355at 5.272 kb on + strand, within LU632_RS25355at 5.275 kb on - strand, within LU632_RS25355at 5.275 kb on - strand, within LU632_RS25355at 5.578 kb on - strand, within LU632_RS25355at 5.650 kb on + strand, within LU632_RS25355at 5.650 kb on + strand, within LU632_RS25355at 5.650 kb on + strand, within LU632_RS25355at 5.650 kb on + strand, within LU632_RS25355at 5.650 kb on + strand, within LU632_RS25355at 5.650 kb on + strand, within LU632_RS25355at 5.651 kb on - strand, within LU632_RS25355at 5.651 kb on - strand, within LU632_RS25355at 5.722 kb on + strand, within LU632_RS25355at 5.722 kb on + strand, within LU632_RS25355at 5.723 kb on - strand, within LU632_RS25355at 5.723 kb on - strand, within LU632_RS25355at 5.786 kb on + strandat 5.787 kb on - strandat 5.787 kb on - strandat 5.787 kb on - strandat 5.787 kb on - strandat 5.798 kb on - strandat 5.848 kb on + strandat 5.849 kb on - strandat 5.858 kb on + strandat 5.994 kb on + strand, within traOat 6.007 kb on + strand, within traOat 6.007 kb on + strand, within traOat 6.008 kb on - strand, within traO

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Per-strain Table

Position Strand Gene LocusTag Fraction plant=Melon; plant sample=M2; plant location=P2
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3,804 - LU632_RS25340 0.43 +0.9
3,906 + LU632_RS25340 0.66 -2.8
3,907 - LU632_RS25340 0.66 -2.7
3,907 - LU632_RS25340 0.66 -0.4
3,940 - LU632_RS25340 0.74 -2.7
4,023 - +0.1
4,038 + +1.3
4,038 + -2.1
4,038 + +0.3
4,038 + -0.9
4,038 + +0.2
4,039 - -0.1
4,039 - +0.7
4,039 - +0.2
4,039 - -0.1
4,135 + +2.9
4,136 - -0.7
4,136 - -0.1
4,200 + -1.7
4,300 + LU632_RS25345 0.23 +0.9
4,443 - LU632_RS25345 0.46 +1.9
4,443 - LU632_RS25345 0.46 -1.6
4,487 - LU632_RS25345 0.53 -1.7
4,487 - LU632_RS25345 0.53 +1.6
4,489 + LU632_RS25345 0.54 -0.8
4,490 - LU632_RS25345 0.54 +1.2
4,490 - LU632_RS25345 0.54 -2.5
4,490 - LU632_RS25345 0.54 +2.3
4,612 + LU632_RS25345 0.73 -0.8
4,612 + LU632_RS25345 0.73 -1.3
4,612 + LU632_RS25345 0.73 -0.7
4,612 + LU632_RS25345 0.73 -1.1
4,613 - LU632_RS25345 0.74 -0.8
4,613 - LU632_RS25345 0.74 +0.4
4,613 - LU632_RS25345 0.74 -2.2
4,613 - LU632_RS25345 0.74 +2.7
4,613 - LU632_RS25345 0.74 +1.9
4,613 - LU632_RS25345 0.74 +0.3
4,613 - LU632_RS25345 0.74 -0.9
4,613 - LU632_RS25345 0.74 +0.3
4,614 + LU632_RS25345 0.74 -2.4
4,614 + LU632_RS25345 0.74 -2.0
4,614 + LU632_RS25345 0.74 -0.8
4,615 - LU632_RS25345 0.74 -0.1
4,692 + LU632_RS25345 0.86 -0.5
4,977 + LU632_RS25350 0.66 -0.9
4,988 + LU632_RS25350 0.70 -0.1
5,272 + LU632_RS25355 0.21 -2.8
5,272 + LU632_RS25355 0.21 -0.4
5,275 - LU632_RS25355 0.21 -0.7
5,275 - LU632_RS25355 0.21 -0.1
5,578 - LU632_RS25355 0.67 -0.4
5,650 + LU632_RS25355 0.77 -1.6
5,650 + LU632_RS25355 0.77 +0.3
5,650 + LU632_RS25355 0.77 +1.5
5,650 + LU632_RS25355 0.77 -2.4
5,650 + LU632_RS25355 0.77 -0.0
5,650 + LU632_RS25355 0.77 -1.1
5,651 - LU632_RS25355 0.78 +1.6
5,651 - LU632_RS25355 0.78 -0.5
5,722 + LU632_RS25355 0.88 -1.0
5,722 + LU632_RS25355 0.88 +0.3
5,723 - LU632_RS25355 0.88 -0.7
5,723 - LU632_RS25355 0.88 +0.9
5,786 + -1.1
5,787 - +0.3
5,787 - +4.1
5,787 - -0.4
5,787 - -1.8
5,798 - -0.9
5,848 + +0.2
5,849 - +0.3
5,858 + +1.9
5,994 + traO LU632_RS25360 0.15 -2.8
6,007 + traO LU632_RS25360 0.16 +0.2
6,007 + traO LU632_RS25360 0.16 -0.5
6,008 - traO LU632_RS25360 0.16 -1.3

Or see this region's nucleotide sequence