Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS24655

Experiment: plant=Melon; plant sample=M2; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M2; plant location=P2
4,696,719	+				+0.7
4,696,806	+				+1.0
4,696,807	-				-0.3
4,696,811	-				+0.4
4,696,827	-				-0.5
4,696,827	-				-1.8
4,696,848	+				-1.8
4,696,848	+				+2.9
4,696,962	+				-1.2
4,696,986	-				+3.4
4,697,002	+				-0.0
4,697,002	+				-0.5
4,697,006	-				+0.2
4,697,046	+				+1.0
4,697,047	-				+0.6
4,697,047	-				+0.6
4,697,047	-				-0.1
4,697,068	-				+0.7
4,697,152	-				+0.6
4,697,152	-				+1.3
4,697,224	+		LU632_RS24655	0.16	+1.9
4,697,225	-		LU632_RS24655	0.16	-0.3
4,697,225	-		LU632_RS24655	0.16	-1.5
4,697,270	-		LU632_RS24655	0.22	+3.6
4,697,336	-		LU632_RS24655	0.31	-0.1
4,697,359	+		LU632_RS24655	0.34	+0.5
4,697,360	-		LU632_RS24655	0.35	-0.6
4,697,360	-		LU632_RS24655	0.35	-1.3
4,697,367	+		LU632_RS24655	0.36	-0.7
4,697,368	-		LU632_RS24655	0.36	+0.6
4,697,384	+		LU632_RS24655	0.38	-0.1
4,697,438	-		LU632_RS24655	0.45	-1.2
4,697,438	-		LU632_RS24655	0.45	-0.6
4,697,438	-		LU632_RS24655	0.45	+0.1
4,697,500	-		LU632_RS24655	0.54	-1.1
4,697,627	+		LU632_RS24655	0.72	+1.7
4,697,649	+		LU632_RS24655	0.75	-1.4
4,697,717	+		LU632_RS24655	0.84	+1.1
4,697,790	+				+0.8
4,697,791	-				+0.5
4,697,807	+				-2.5
4,697,808	-				-1.8
4,697,831	-				+0.3
4,697,831	-				+0.5
4,697,882	+				-1.1
4,697,883	-				+0.5
4,697,883	-				+1.1
4,697,885	+				+0.6
4,697,917	+				+0.3
4,698,081	+		LU632_RS24660	0.68	-0.3
4,698,095	+		LU632_RS24660	0.77	+2.0
4,698,095	+		LU632_RS24660	0.77	-0.7
4,698,202	+				-0.5
4,698,217	-				+0.9
4,698,217	-				+0.8
4,698,244	+				-0.8
4,698,250	-				+0.5
4,698,349	+				+1.4