Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS24405

Experiment: plant=Melon; plant sample=M2; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M2; plant location=P2
4,654,829	-	ilvD	LU632_RS24400	0.52	-2.5
4,654,882	+	ilvD	LU632_RS24400	0.55	+0.3
4,654,883	-	ilvD	LU632_RS24400	0.55	-1.6
4,654,955	+	ilvD	LU632_RS24400	0.59	-3.0
4,655,002	+	ilvD	LU632_RS24400	0.61	-1.8
4,655,002	+	ilvD	LU632_RS24400	0.61	-3.3
4,655,003	-	ilvD	LU632_RS24400	0.61	-2.3
4,655,003	-	ilvD	LU632_RS24400	0.61	-2.9
4,655,328	-	ilvD	LU632_RS24400	0.79	-0.3
4,655,356	+	ilvD	LU632_RS24400	0.80	-0.7
4,655,400	+	ilvD	LU632_RS24400	0.83	-2.9
4,655,400	+	ilvD	LU632_RS24400	0.83	-1.9
4,655,401	-	ilvD	LU632_RS24400	0.83	-1.5
4,655,401	-	ilvD	LU632_RS24400	0.83	-1.7
4,655,443	-	ilvD	LU632_RS24400	0.85	-0.1
4,655,596	+				+0.3
4,655,675	-				-2.0
4,655,706	+				-2.9
4,655,707	-				-2.7
4,655,711	-				-0.5
4,655,711	-				-2.1
4,655,722	+				-1.3
4,655,739	-				-1.7
4,655,889	+		LU632_RS24405	0.12	-3.3
4,655,889	+		LU632_RS24405	0.12	-4.4
4,655,889	+		LU632_RS24405	0.12	-4.5
4,655,945	+		LU632_RS24405	0.18	-0.7
4,655,946	-		LU632_RS24405	0.18	-1.3
4,655,965	+		LU632_RS24405	0.20	-2.7
4,655,966	-		LU632_RS24405	0.21	-0.9
4,655,968	-		LU632_RS24405	0.21	-1.9
4,655,968	-		LU632_RS24405	0.21	-1.7
4,655,968	-		LU632_RS24405	0.21	-2.5
4,656,026	+		LU632_RS24405	0.27	-0.9
4,656,027	-		LU632_RS24405	0.27	-1.1
4,656,081	-		LU632_RS24405	0.33	-0.1
4,656,134	+		LU632_RS24405	0.39	-2.6
4,656,134	+		LU632_RS24405	0.39	-1.3
4,656,135	-		LU632_RS24405	0.39	-1.1
4,656,135	-		LU632_RS24405	0.39	-1.7
4,656,136	+		LU632_RS24405	0.39	-0.5
4,656,214	+		LU632_RS24405	0.47	-2.3
4,656,215	-		LU632_RS24405	0.47	-3.9
4,656,219	-		LU632_RS24405	0.48	+0.3
4,656,219	-		LU632_RS24405	0.48	-2.8
4,656,219	-		LU632_RS24405	0.48	-1.3
4,656,219	-		LU632_RS24405	0.48	-0.6
4,656,249	-		LU632_RS24405	0.51	-3.5
4,656,251	+		LU632_RS24405	0.51	-2.7
4,656,251	+		LU632_RS24405	0.51	-1.9
4,656,319	+		LU632_RS24405	0.58	-0.7
4,656,319	+		LU632_RS24405	0.58	-5.0
4,656,320	-		LU632_RS24405	0.59	-2.8
4,656,344	+		LU632_RS24405	0.61	-3.9
4,656,419	+		LU632_RS24405	0.69	-4.5
4,656,420	-		LU632_RS24405	0.69	-1.8
4,656,421	+		LU632_RS24405	0.69	-3.9
4,656,421	+		LU632_RS24405	0.69	-0.6
4,656,422	-		LU632_RS24405	0.70	-2.7
4,656,422	-		LU632_RS24405	0.70	-3.3
4,656,488	-		LU632_RS24405	0.77	-2.9
4,656,488	-		LU632_RS24405	0.77	-1.7
4,656,581	-		LU632_RS24405	0.87	-0.7
4,656,609	-		LU632_RS24405	0.90	-0.5
4,656,609	-		LU632_RS24405	0.90	-0.7
4,656,609	-		LU632_RS24405	0.90	-0.5
4,656,609	-		LU632_RS24405	0.90	-1.1
4,656,659	+				-2.0
4,656,660	-				-3.4
4,656,660	-				-3.9
4,656,683	+				-2.4
4,656,684	-				-1.6
4,656,741	+				-0.0
4,656,742	-				-0.0
4,656,742	-				+1.2
4,656,766	+	ilvM	LU632_RS24410	0.17	-0.1
4,656,767	-	ilvM	LU632_RS24410	0.17	-0.4
4,656,788	+	ilvM	LU632_RS24410	0.25	-2.6
4,656,804	+	ilvM	LU632_RS24410	0.31	-1.4
4,656,884	+	ilvM	LU632_RS24410	0.62	-1.2
4,656,884	+	ilvM	LU632_RS24410	0.62	+2.6
4,656,885	-	ilvM	LU632_RS24410	0.63	+1.2
4,656,885	-	ilvM	LU632_RS24410	0.63	+0.1
4,657,071	+				-1.9
4,657,071	+				+0.3
4,657,071	+				-0.1
4,657,071	+				+1.9
4,657,072	-				+0.7
4,657,072	-				-0.3
4,657,072	-				-1.3
4,657,072	-				-1.3
4,657,072	-				-0.1
4,657,072	-				+0.5
4,657,072	-				+0.4
4,657,085	-				+0.0
4,657,100	+				-0.1
4,657,101	-				-0.2
4,657,101	-				-1.1
4,657,101	-				+0.1
4,657,101	-				-0.1
4,657,123	+				+0.6
4,657,124	-				-0.1
4,657,124	-				-0.9
4,657,129	+				+2.0
4,657,129	+				+2.1
4,657,129	+				+0.3
4,657,130	-				-0.2
4,657,132	+				-0.2
4,657,204	+	ilvG	LU632_RS24415	0.14	-1.5
4,657,207	-	ilvG	LU632_RS24415	0.14	+0.3
4,657,364	-	ilvG	LU632_RS24415	0.23	-0.0
4,657,438	+	ilvG	LU632_RS24415	0.28	-0.6
4,657,468	+	ilvG	LU632_RS24415	0.30	-1.7
4,657,468	+	ilvG	LU632_RS24415	0.30	+0.6
4,657,468	+	ilvG	LU632_RS24415	0.30	+0.6
4,657,468	+	ilvG	LU632_RS24415	0.30	+0.7
4,657,468	+	ilvG	LU632_RS24415	0.30	-1.1
4,657,469	-	ilvG	LU632_RS24415	0.30	-0.7
4,657,469	-	ilvG	LU632_RS24415	0.30	+1.9
4,657,469	-	ilvG	LU632_RS24415	0.30	-1.0
4,657,469	-	ilvG	LU632_RS24415	0.30	-2.4
4,657,469	-	ilvG	LU632_RS24415	0.30	+0.3
4,657,469	-	ilvG	LU632_RS24415	0.30	+0.6
4,657,469	-	ilvG	LU632_RS24415	0.30	-0.5
4,657,566	+	ilvG	LU632_RS24415	0.36	+0.1
4,657,566	+	ilvG	LU632_RS24415	0.36	-1.5
4,657,566	+	ilvG	LU632_RS24415	0.36	+0.6
4,657,566	+	ilvG	LU632_RS24415	0.36	-0.9
4,657,567	-	ilvG	LU632_RS24415	0.36	-0.2
4,657,567	-	ilvG	LU632_RS24415	0.36	+0.6
4,657,567	-	ilvG	LU632_RS24415	0.36	+0.1
4,657,591	-	ilvG	LU632_RS24415	0.37	+0.6
4,657,659	+	ilvG	LU632_RS24415	0.41	-0.5
4,657,660	-	ilvG	LU632_RS24415	0.41	+0.4
4,657,660	-	ilvG	LU632_RS24415	0.41	-3.1