Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS24175

Experiment: plant=Melon; plant sample=M2; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M2; plant location=P2
4,611,365	+	hemX	LU632_RS24170	0.14	-0.7
4,611,366	-	hemX	LU632_RS24170	0.14	+0.3
4,611,366	-	hemX	LU632_RS24170	0.14	+1.9
4,611,375	-	hemX	LU632_RS24170	0.15	-0.5
4,611,641	+	hemX	LU632_RS24170	0.38	+0.9
4,611,641	+	hemX	LU632_RS24170	0.38	-1.1
4,611,642	-	hemX	LU632_RS24170	0.38	-1.3
4,611,642	-	hemX	LU632_RS24170	0.38	-0.7
4,611,642	-	hemX	LU632_RS24170	0.38	-2.2
4,611,751	+	hemX	LU632_RS24170	0.48	-0.7
4,611,796	-	hemX	LU632_RS24170	0.52	-1.5
4,611,827	-	hemX	LU632_RS24170	0.54	-0.1
4,611,830	+	hemX	LU632_RS24170	0.55	-0.7
4,611,917	-	hemX	LU632_RS24170	0.62	-0.3
4,611,917	-	hemX	LU632_RS24170	0.62	-2.2
4,611,953	+	hemX	LU632_RS24170	0.65	+0.3
4,611,954	-	hemX	LU632_RS24170	0.65	+1.3
4,611,971	+	hemX	LU632_RS24170	0.67	-1.0
4,611,971	+	hemX	LU632_RS24170	0.67	-0.5
4,612,019	+	hemX	LU632_RS24170	0.71	-1.3
4,612,020	-	hemX	LU632_RS24170	0.71	-2.0
4,612,105	-	hemX	LU632_RS24170	0.79	-0.9
4,612,115	+	hemX	LU632_RS24170	0.80	+0.9
4,612,115	+	hemX	LU632_RS24170	0.80	-1.0
4,612,180	-	hemX	LU632_RS24170	0.85	-1.9
4,612,221	-	hemX	LU632_RS24170	0.89	-0.3
4,612,354	+				-0.9
4,612,361	-				-1.1
4,612,361	-				-0.5
4,612,366	-				-0.1
4,612,428	-				-2.1
4,612,486	+	hemY	LU632_RS24175	0.12	-1.4
4,612,624	-	hemY	LU632_RS24175	0.23	+1.1
4,612,709	+	hemY	LU632_RS24175	0.30	-1.9
4,612,710	-	hemY	LU632_RS24175	0.30	-0.9
4,612,831	+	hemY	LU632_RS24175	0.40	-0.8
4,612,937	+	hemY	LU632_RS24175	0.49	-1.0
4,613,028	+	hemY	LU632_RS24175	0.57	-3.2
4,613,167	+	hemY	LU632_RS24175	0.69	-1.4
4,613,168	-	hemY	LU632_RS24175	0.69	-0.5
4,613,339	+	hemY	LU632_RS24175	0.83	-0.5
4,613,538	-				-0.8
4,613,571	-				-0.4
4,613,585	+				+0.6
4,613,665	+				-0.3
4,613,665	+				-0.3
4,613,889	-				-0.7
4,613,926	-				-0.1
4,613,940	+				+1.4
4,613,941	-				-1.1
4,613,941	-				-0.4
4,613,988	+				+0.9
4,613,988	+				-0.8
4,613,988	+				+0.4
4,613,988	+				-0.1
4,614,040	-				-0.4
4,614,087	+				-0.5
4,614,088	-				+1.7
4,614,132	+				-0.5
4,614,156	+				+0.5
4,614,157	-				-0.7
4,614,159	-				-0.0
4,614,159	-				+0.6
4,614,159	-				+0.1
4,614,324	+				-1.7
4,614,324	+				-0.9
4,614,336	-				+1.1
4,614,336	-				-1.1
4,614,383	+				-0.7