Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS23195

Experiment: plant=Melon; plant sample=M2; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M2; plant location=P2
4,419,305	+				+1.6
4,419,312	+				-0.9
4,419,312	+				+1.5
4,419,326	-				-0.8
4,419,397	+				+0.7
4,419,397	+				-0.7
4,419,397	+				-1.3
4,419,672	+		LU632_RS23190	0.31	-0.8
4,419,673	-		LU632_RS23190	0.31	+0.8
4,419,673	-		LU632_RS23190	0.31	-0.5
4,419,698	-		LU632_RS23190	0.35	+0.0
4,419,848	+		LU632_RS23190	0.58	+0.1
4,419,919	-		LU632_RS23190	0.69	-0.3
4,419,923	+		LU632_RS23190	0.70	+0.8
4,420,057	-				-1.8
4,420,128	-				+0.6
4,420,258	-				+1.4
4,420,273	+				+1.2
4,420,416	+		LU632_RS23195	0.72	-0.7
4,420,488	-				-0.2
4,420,531	+				-2.8
4,420,629	+		LU632_RS23200	0.13	-1.0
4,420,630	-		LU632_RS23200	0.13	-1.4
4,420,660	+		LU632_RS23200	0.19	-1.1
4,420,820	+		LU632_RS23200	0.52	-0.5
4,420,951	+		LU632_RS23200	0.79	-2.6
4,420,951	+		LU632_RS23200	0.79	+0.8
4,421,027	-				-1.4
4,421,073	+		LU632_RS23205	0.16	-0.5
4,421,073	+		LU632_RS23205	0.16	+0.6
4,421,074	-		LU632_RS23205	0.17	-2.5
4,421,079	-		LU632_RS23205	0.20	+0.9
4,421,079	-		LU632_RS23205	0.20	+0.2
4,421,079	-		LU632_RS23205	0.20	+4.3
4,421,128	+		LU632_RS23205	0.52	-0.2
4,421,128	+		LU632_RS23205	0.52	-0.3
4,421,272	+				-1.0
4,421,272	+				+0.8
4,421,272	+				-1.2
4,421,279	+				+0.5
4,421,329	-				-0.5
4,421,331	+				+1.0
4,421,361	+				-1.9
4,421,401	+		LU632_RS23210	0.15	+3.2
4,421,433	-		LU632_RS23210	0.22	-1.0
4,421,441	+		LU632_RS23210	0.24	-1.3