Experiment: plant=Melon; plant sample=M2; plant location=P2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt hofQ and LU632_RS22880 overlap by 65 nucleotides LU632_RS22880 and LU632_RS22885 overlap by 14 nucleotides LU632_RS22885 and LU632_RS22890 overlap by 11 nucleotides LU632_RS22890 and pilM overlap by 1 nucleotides
LU632_RS22875: hofQ - DNA uptake porin HofQ, at 4,355,336 to 4,356,592
hofQ
LU632_RS22880: LU632_RS22880 - DNA utilization family protein, at 4,356,528 to 4,356,932
_RS22880
LU632_RS22885: LU632_RS22885 - hypothetical protein, at 4,356,919 to 4,357,422
_RS22885
LU632_RS22890: LU632_RS22890 - PilN domain-containing protein, at 4,357,412 to 4,357,996
_RS22890
LU632_RS22895: pilM - pilus assembly protein PilM, at 4,357,996 to 4,358,820
pilM
Position (kb) 4356
4357
4358 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 4355.996 kb on - strand, within hofQ at 4356.005 kb on + strand, within hofQ at 4356.006 kb on - strand, within hofQ at 4356.115 kb on + strand, within hofQ at 4356.115 kb on + strand, within hofQ at 4356.137 kb on - strand, within hofQ at 4356.227 kb on - strand, within hofQ at 4356.232 kb on + strand, within hofQ at 4356.232 kb on + strand, within hofQ at 4356.232 kb on + strand, within hofQ at 4356.236 kb on + strand, within hofQ at 4356.237 kb on - strand, within hofQ at 4356.323 kb on - strand, within hofQ at 4356.529 kb on + strand at 4356.530 kb on - strand at 4356.536 kb on + strand at 4356.569 kb on + strand at 4356.570 kb on - strand at 4356.572 kb on + strand at 4356.572 kb on + strand at 4356.592 kb on + strand at 4356.592 kb on + strand at 4356.597 kb on - strand, within LU632_RS22880 at 4356.606 kb on + strand, within LU632_RS22880 at 4356.607 kb on - strand, within LU632_RS22880 at 4356.758 kb on - strand, within LU632_RS22880 at 4356.830 kb on + strand, within LU632_RS22880 at 4356.831 kb on - strand, within LU632_RS22880 at 4356.831 kb on - strand, within LU632_RS22880 at 4356.866 kb on - strand, within LU632_RS22880 at 4356.884 kb on + strand, within LU632_RS22880 at 4356.885 kb on - strand, within LU632_RS22880 at 4356.885 kb on - strand, within LU632_RS22880 at 4356.885 kb on - strand, within LU632_RS22880 at 4356.923 kb on - strand at 4356.933 kb on + strand at 4356.933 kb on + strand at 4356.934 kb on - strand at 4356.934 kb on - strand at 4356.938 kb on - strand at 4356.997 kb on + strand, within LU632_RS22885 at 4357.021 kb on + strand, within LU632_RS22885 at 4357.021 kb on + strand, within LU632_RS22885 at 4357.021 kb on + strand, within LU632_RS22885 at 4357.021 kb on + strand, within LU632_RS22885 at 4357.022 kb on - strand, within LU632_RS22885 at 4357.022 kb on - strand, within LU632_RS22885 at 4357.022 kb on - strand, within LU632_RS22885 at 4357.022 kb on - strand, within LU632_RS22885 at 4357.086 kb on + strand, within LU632_RS22885 at 4357.126 kb on - strand, within LU632_RS22885 at 4357.126 kb on - strand, within LU632_RS22885 at 4357.188 kb on + strand, within LU632_RS22885 at 4357.188 kb on + strand, within LU632_RS22885 at 4357.207 kb on + strand, within LU632_RS22885 at 4357.251 kb on + strand, within LU632_RS22885 at 4357.252 kb on - strand, within LU632_RS22885 at 4357.252 kb on - strand, within LU632_RS22885 at 4357.252 kb on - strand, within LU632_RS22885 at 4357.321 kb on + strand, within LU632_RS22885 at 4357.322 kb on - strand, within LU632_RS22885 at 4357.391 kb on + strand at 4357.414 kb on - strand at 4357.550 kb on - strand, within LU632_RS22890 at 4357.626 kb on - strand, within LU632_RS22890 at 4357.838 kb on + strand, within LU632_RS22890 at 4357.839 kb on - strand, within LU632_RS22890 at 4357.839 kb on - strand, within LU632_RS22890 at 4357.839 kb on - strand, within LU632_RS22890 at 4357.958 kb on + strand at 4358.171 kb on + strand, within pilM at 4358.171 kb on + strand, within pilM at 4358.249 kb on + strand, within pilM at 4358.250 kb on - strand, within pilM at 4358.250 kb on - strand, within pilM at 4358.307 kb on + strand, within pilM at 4358.307 kb on + strand, within pilM at 4358.308 kb on - strand, within pilM at 4358.308 kb on - strand, within pilM at 4358.308 kb on - strand, within pilM at 4358.308 kb on - strand, within pilM at 4358.308 kb on - strand, within pilM
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Melon; plant sample=M2; plant location=P2 remove 4,355,996 - hofQ LU632_RS22875 0.53 -1.1 4,356,005 + hofQ LU632_RS22875 0.53 +0.7 4,356,006 - hofQ LU632_RS22875 0.53 -1.9 4,356,115 + hofQ LU632_RS22875 0.62 +0.7 4,356,115 + hofQ LU632_RS22875 0.62 -0.5 4,356,137 - hofQ LU632_RS22875 0.64 +0.1 4,356,227 - hofQ LU632_RS22875 0.71 -1.0 4,356,232 + hofQ LU632_RS22875 0.71 +0.4 4,356,232 + hofQ LU632_RS22875 0.71 -1.0 4,356,232 + hofQ LU632_RS22875 0.71 +2.9 4,356,236 + hofQ LU632_RS22875 0.72 -0.3 4,356,237 - hofQ LU632_RS22875 0.72 +1.9 4,356,323 - hofQ LU632_RS22875 0.79 +0.3 4,356,529 + -1.5 4,356,530 - -0.4 4,356,536 + +0.5 4,356,569 + -1.2 4,356,570 - -2.3 4,356,572 + -2.6 4,356,572 + +0.6 4,356,592 + -1.4 4,356,592 + -2.0 4,356,597 - LU632_RS22880 0.17 -2.1 4,356,606 + LU632_RS22880 0.19 -0.8 4,356,607 - LU632_RS22880 0.20 +1.1 4,356,758 - LU632_RS22880 0.57 -0.5 4,356,830 + LU632_RS22880 0.75 -0.2 4,356,831 - LU632_RS22880 0.75 -0.2 4,356,831 - LU632_RS22880 0.75 -0.8 4,356,866 - LU632_RS22880 0.83 +0.8 4,356,884 + LU632_RS22880 0.88 -0.8 4,356,885 - LU632_RS22880 0.88 -0.7 4,356,885 - LU632_RS22880 0.88 +1.1 4,356,885 - LU632_RS22880 0.88 +4.0 4,356,923 - +2.3 4,356,933 + -0.5 4,356,933 + -1.9 4,356,934 - +1.8 4,356,934 - +0.7 4,356,938 - +2.3 4,356,997 + LU632_RS22885 0.15 -0.7 4,357,021 + LU632_RS22885 0.20 -1.1 4,357,021 + LU632_RS22885 0.20 +1.1 4,357,021 + LU632_RS22885 0.20 +0.5 4,357,021 + LU632_RS22885 0.20 +0.3 4,357,022 - LU632_RS22885 0.20 +0.3 4,357,022 - LU632_RS22885 0.20 -0.4 4,357,022 - LU632_RS22885 0.20 -1.8 4,357,022 - LU632_RS22885 0.20 +2.4 4,357,086 + LU632_RS22885 0.33 +0.9 4,357,126 - LU632_RS22885 0.41 +0.6 4,357,126 - LU632_RS22885 0.41 +0.9 4,357,188 + LU632_RS22885 0.53 -1.0 4,357,188 + LU632_RS22885 0.53 -0.5 4,357,207 + LU632_RS22885 0.57 -2.1 4,357,251 + LU632_RS22885 0.66 -1.6 4,357,252 - LU632_RS22885 0.66 +1.2 4,357,252 - LU632_RS22885 0.66 +0.4 4,357,252 - LU632_RS22885 0.66 -1.7 4,357,321 + LU632_RS22885 0.80 +2.9 4,357,322 - LU632_RS22885 0.80 +0.3 4,357,391 + -0.3 4,357,414 - -1.2 4,357,550 - LU632_RS22890 0.24 -0.7 4,357,626 - LU632_RS22890 0.37 -0.5 4,357,838 + LU632_RS22890 0.73 -1.0 4,357,839 - LU632_RS22890 0.73 +0.6 4,357,839 - LU632_RS22890 0.73 -3.0 4,357,839 - LU632_RS22890 0.73 +0.6 4,357,958 + +0.1 4,358,171 + pilM LU632_RS22895 0.21 +1.0 4,358,171 + pilM LU632_RS22895 0.21 +0.1 4,358,249 + pilM LU632_RS22895 0.31 +1.2 4,358,250 - pilM LU632_RS22895 0.31 +0.8 4,358,250 - pilM LU632_RS22895 0.31 +0.7 4,358,307 + pilM LU632_RS22895 0.38 -1.4 4,358,307 + pilM LU632_RS22895 0.38 -0.4 4,358,308 - pilM LU632_RS22895 0.38 -2.5 4,358,308 - pilM LU632_RS22895 0.38 +1.1 4,358,308 - pilM LU632_RS22895 0.38 -1.2 4,358,308 - pilM LU632_RS22895 0.38 -1.5 4,358,308 - pilM LU632_RS22895 0.38 -0.6
Or see this region's nucleotide sequence