Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS22770

Experiment: plant=Melon; plant sample=M2; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M2; plant location=P2
4,334,497	+	tauA	LU632_RS22765	0.37	-2.3
4,334,498	-	tauA	LU632_RS22765	0.37	+0.2
4,334,594	+	tauA	LU632_RS22765	0.47	-1.7
4,334,594	+	tauA	LU632_RS22765	0.47	-1.1
4,334,594	+	tauA	LU632_RS22765	0.47	-1.9
4,334,594	+	tauA	LU632_RS22765	0.47	+0.2
4,334,594	+	tauA	LU632_RS22765	0.47	-0.8
4,334,608	-	tauA	LU632_RS22765	0.49	+1.2
4,334,662	+	tauA	LU632_RS22765	0.55	+0.8
4,334,663	-	tauA	LU632_RS22765	0.55	+2.6
4,334,727	+	tauA	LU632_RS22765	0.61	+0.4
4,334,727	+	tauA	LU632_RS22765	0.61	+0.5
4,334,728	-	tauA	LU632_RS22765	0.61	+0.6
4,334,728	-	tauA	LU632_RS22765	0.61	-0.7
4,334,728	-	tauA	LU632_RS22765	0.61	+0.3
4,334,772	+	tauA	LU632_RS22765	0.66	+1.7
4,334,772	+	tauA	LU632_RS22765	0.66	-2.1
4,334,775	+	tauA	LU632_RS22765	0.66	-0.4
4,334,776	-	tauA	LU632_RS22765	0.66	+0.7
4,335,029	+				-1.5
4,335,214	+				-0.7
4,335,244	+				+0.4
4,335,244	+				-0.6
4,335,244	+				+2.4
4,335,248	+				-1.2
4,335,248	+				+0.8
4,335,274	-				+2.3
4,335,282	-				-0.4
4,335,348	-				+0.6
4,335,348	-				+0.5
4,335,348	-				+0.0
4,335,348	-				-1.3
4,335,348	-				-1.9
4,335,382	+				+1.5
4,336,222	+				-0.5
4,336,222	+				-2.6
4,336,224	+				+0.1
4,336,224	+				+1.3
4,336,337	+		LU632_RS22775	0.14	-0.2
4,336,410	+		LU632_RS22775	0.26	-1.2
4,336,410	+		LU632_RS22775	0.26	-0.2
4,336,410	+		LU632_RS22775	0.26	+4.0
4,336,411	-		LU632_RS22775	0.27	+0.1
4,336,496	+		LU632_RS22775	0.41	-0.5
4,336,507	-		LU632_RS22775	0.42	+0.9
4,336,781	+		LU632_RS22775	0.88	+1.4
4,336,781	+		LU632_RS22775	0.88	+0.8
4,336,781	+		LU632_RS22775	0.88	+0.4
4,336,781	+		LU632_RS22775	0.88	-1.4
4,336,782	-		LU632_RS22775	0.88	-0.2
4,336,784	+		LU632_RS22775	0.88	+2.4
4,336,784	+		LU632_RS22775	0.88	+0.7
4,336,784	+		LU632_RS22775	0.88	+0.3
4,336,784	+		LU632_RS22775	0.88	-0.5
4,336,784	+		LU632_RS22775	0.88	+0.8
4,336,785	-		LU632_RS22775	0.89	+0.5
4,336,785	-		LU632_RS22775	0.89	+0.4
4,336,785	-		LU632_RS22775	0.89	+3.7
4,336,787	+		LU632_RS22775	0.89	+0.4
4,336,787	+		LU632_RS22775	0.89	-0.4
4,336,787	+		LU632_RS22775	0.89	+0.8
4,336,787	+		LU632_RS22775	0.89	+2.1
4,336,788	-		LU632_RS22775	0.89	+0.4
4,336,788	-		LU632_RS22775	0.89	-0.3
4,336,788	-		LU632_RS22775	0.89	+1.2
4,336,788	-		LU632_RS22775	0.89	+1.0
4,336,788	-		LU632_RS22775	0.89	-0.5
4,336,854	-				-0.9
4,336,902	+				+0.2
4,336,908	+				+0.5
4,336,928	+				+0.7
4,336,945	+				-0.0
4,336,945	+				-1.0
4,337,125	-		LU632_RS22780	0.19	+1.1
4,337,168	-		LU632_RS22780	0.24	+4.9