Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS22260

Experiment: plant=Melon; plant sample=M2; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M2; plant location=P2
4,253,729	+				+0.6
4,253,730	-				-0.8
4,253,730	-				+0.2
4,253,733	+				-1.0
4,253,823	+				-1.2
4,253,824	-				-0.2
4,253,826	-				+0.5
4,253,850	+				-0.6
4,253,864	+		LU632_RS22255	0.14	+0.4
4,253,864	+		LU632_RS22255	0.14	+2.5
4,253,868	+		LU632_RS22255	0.15	-1.3
4,253,869	-		LU632_RS22255	0.16	-0.4
4,253,869	-		LU632_RS22255	0.16	+0.9
4,254,036	+		LU632_RS22255	0.76	+1.6
4,254,036	+		LU632_RS22255	0.76	+2.0
4,254,036	+		LU632_RS22255	0.76	+0.3
4,254,080	+				+0.0
4,254,080	+				+0.3
4,254,081	-				+1.9
4,254,116	+				+0.8
4,254,116	+				+0.7
4,254,116	+				-1.8
4,254,167	+				-1.0
4,254,168	-				+0.2
4,254,168	-				-1.0
4,254,188	+				+0.3
4,254,189	-				-1.5
4,254,193	-				+0.2
4,254,219	-				-1.9
4,254,231	+				-0.2
4,254,337	-				+0.6
4,254,399	+				-0.0
4,254,399	+				+1.8
4,254,423	+				-1.8
4,254,424	-				+0.6
4,254,424	-				+0.1
4,254,566	+				-0.2
4,254,580	-				-0.8
4,254,598	+				+2.1
4,254,630	+				-1.0
4,254,631	-				+2.6
4,254,631	-				+0.1
4,254,686	+				+0.5
4,254,706	+		LU632_RS22260	0.16	+2.2
4,254,707	-		LU632_RS22260	0.16	-0.5
4,254,782	+		LU632_RS22260	0.41	+1.3
4,254,844	+		LU632_RS22260	0.63	+0.8
4,254,844	+		LU632_RS22260	0.63	-2.6
4,254,844	+		LU632_RS22260	0.63	-0.5
4,254,875	+		LU632_RS22260	0.73	-0.9
4,254,911	-		LU632_RS22260	0.85	+1.9
4,254,926	+				+0.9
4,254,927	-				-1.5
4,254,927	-				+0.7
4,254,968	+				-2.7
4,254,969	-				+0.7
4,254,970	+				-0.0
4,254,987	+				-2.7
4,255,772	+				+1.4
4,255,772	+				+0.1
4,255,858	+		LU632_RS22270	0.60	+2.0
4,255,859	-		LU632_RS22270	0.60	-0.5
4,255,859	-		LU632_RS22270	0.60	-1.5