Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS21720

Experiment: plant=Melon; plant sample=M2; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M2; plant location=P2
4,152,159	+				+0.5
4,152,159	+				+0.2
4,152,159	+				+1.9
4,152,160	-				-1.0
4,152,173	+				-2.2
4,152,189	+				+2.9
4,152,211	+				+0.2
4,152,295	+	rplI	LU632_RS21710	0.27	+2.8
4,152,296	-	rplI	LU632_RS21710	0.27	-0.2
4,152,296	-	rplI	LU632_RS21710	0.27	-1.7
4,152,296	-	rplI	LU632_RS21710	0.27	+1.2
4,152,339	+	rplI	LU632_RS21710	0.37	+1.3
4,152,361	-	rplI	LU632_RS21710	0.42	+1.5
4,152,378	+	rplI	LU632_RS21710	0.45	-1.2
4,152,599	-				+1.6
4,152,638	+				-1.3
4,152,682	-				-0.5
4,153,767	+				+1.3
4,154,053	+	yjfP	LU632_RS21730	0.29	+2.0
4,154,054	-	yjfP	LU632_RS21730	0.30	+1.2
4,154,058	+	yjfP	LU632_RS21730	0.30	-1.9
4,154,059	-	yjfP	LU632_RS21730	0.30	-1.1
4,154,109	-	yjfP	LU632_RS21730	0.37	+3.6
4,154,109	-	yjfP	LU632_RS21730	0.37	-0.8