Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS21670

Experiment: plant=Melon; plant sample=M2; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M2; plant location=P2
4,143,327	+		LU632_RS21665	0.54	-0.5
4,143,328	-		LU632_RS21665	0.54	-0.2
4,143,333	+		LU632_RS21665	0.54	-0.3
4,143,334	-		LU632_RS21665	0.54	+0.2
4,143,396	+		LU632_RS21665	0.58	+0.2
4,143,397	-		LU632_RS21665	0.58	+1.0
4,143,397	-		LU632_RS21665	0.58	+1.8
4,143,419	-		LU632_RS21665	0.60	-2.0
4,143,423	+		LU632_RS21665	0.60	-1.4
4,143,424	-		LU632_RS21665	0.60	+1.1
4,143,560	+		LU632_RS21665	0.69	+0.6
4,143,610	-		LU632_RS21665	0.72	+1.6
4,143,610	-		LU632_RS21665	0.72	+5.1
4,143,629	-		LU632_RS21665	0.73	+0.4
4,143,748	-		LU632_RS21665	0.81	-0.8
4,143,836	+		LU632_RS21665	0.87	-0.2
4,143,842	-		LU632_RS21665	0.87	+2.7
4,143,908	-				-1.0
4,143,967	-				-0.1
4,143,979	+				-1.2
4,143,979	+				-1.4
4,143,979	+				-0.2
4,143,980	-				+1.8
4,143,981	+				-0.4
4,143,982	-				+0.2
4,144,037	-				-1.6
4,144,116	+				-1.1
4,144,164	-				-0.7
4,144,193	-				+1.3
4,144,230	+				+1.4
4,144,280	-				-1.1
4,144,282	+				-0.3
4,144,282	+				-1.7
4,144,282	+				+1.3
4,144,283	-				-3.2
4,144,301	+				+0.8
4,144,434	-				-1.7
4,144,526	+				-2.2
4,144,671	+	opgB	LU632_RS21670	0.15	-0.8
4,144,672	-	opgB	LU632_RS21670	0.15	-1.9
4,144,672	-	opgB	LU632_RS21670	0.15	+0.5
4,144,672	-	opgB	LU632_RS21670	0.15	-1.0
4,144,672	-	opgB	LU632_RS21670	0.15	+1.2
4,144,672	-	opgB	LU632_RS21670	0.15	-1.1
4,144,729	+	opgB	LU632_RS21670	0.18	-1.2
4,144,743	+	opgB	LU632_RS21670	0.18	+0.9
4,144,748	+	opgB	LU632_RS21670	0.18	+1.6
4,144,749	-	opgB	LU632_RS21670	0.19	-1.0
4,144,749	-	opgB	LU632_RS21670	0.19	+0.2
4,144,749	-	opgB	LU632_RS21670	0.19	+0.5
4,144,749	-	opgB	LU632_RS21670	0.19	-1.7
4,144,749	-	opgB	LU632_RS21670	0.19	+0.9
4,144,749	-	opgB	LU632_RS21670	0.19	-0.5
4,144,791	+	opgB	LU632_RS21670	0.20	+0.6
4,144,906	-	opgB	LU632_RS21670	0.25	+0.7
4,144,927	+	opgB	LU632_RS21670	0.26	-0.8
4,145,029	-	opgB	LU632_RS21670	0.31	+1.5
4,145,072	+	opgB	LU632_RS21670	0.33	-1.8
4,145,073	-	opgB	LU632_RS21670	0.33	+0.7
4,145,076	-	opgB	LU632_RS21670	0.33	+0.7
4,145,081	+	opgB	LU632_RS21670	0.33	+3.0
4,145,093	+	opgB	LU632_RS21670	0.33	+0.1
4,145,093	+	opgB	LU632_RS21670	0.33	+0.2
4,145,094	-	opgB	LU632_RS21670	0.34	+0.1
4,145,299	+	opgB	LU632_RS21670	0.42	+2.8
4,145,299	+	opgB	LU632_RS21670	0.42	+0.8
4,145,470	-	opgB	LU632_RS21670	0.50	-0.8
4,145,470	-	opgB	LU632_RS21670	0.50	-1.3
4,145,485	+	opgB	LU632_RS21670	0.50	-1.4
4,145,507	-	opgB	LU632_RS21670	0.51	-1.1
4,145,543	-	opgB	LU632_RS21670	0.53	-2.3
4,145,624	-	opgB	LU632_RS21670	0.57	+0.6
4,145,648	-	opgB	LU632_RS21670	0.58	+1.1
4,145,670	+	opgB	LU632_RS21670	0.59	+0.3
4,145,671	-	opgB	LU632_RS21670	0.59	-1.4
4,145,769	+	opgB	LU632_RS21670	0.63	+0.6
4,145,878	+	opgB	LU632_RS21670	0.68	-0.7
4,145,952	-	opgB	LU632_RS21670	0.71	-0.1
4,146,142	+	opgB	LU632_RS21670	0.79	-0.0
4,146,177	+	opgB	LU632_RS21670	0.81	-1.1
4,146,361	+	opgB	LU632_RS21670	0.88	-1.8
4,146,438	+				-0.7
4,146,573	+				+0.8
4,146,612	-				+0.2
4,146,789	-		LU632_RS21675	0.83	+0.2
4,146,955	+				-1.4