Experiment: plant=Melon; plant sample=M2; plant location=P2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt argF and rraB are separated by 157 nucleotides rraB and LU632_RS20910 are separated by 109 nucleotides LU632_RS20910 and LU632_RS20915 are separated by 76 nucleotides
LU632_RS20900: argF - ornithine carbamoyltransferase, at 3,994,205 to 3,995,215
argF
LU632_RS20905: rraB - ribonuclease E inhibitor RraB, at 3,995,373 to 3,995,789
rraB
LU632_RS20910: LU632_RS20910 - tRNA isopentenyl-2-thiomethyl-A-37 hydroxylase MiaE, at 3,995,899 to 3,996,662
_RS20910
LU632_RS20915: LU632_RS20915 - IS1 family transposase, at 3,996,739 to 3,997,436
_RS20915
Position (kb) 3995
3996 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 3994.427 kb on + strand, within argF at 3994.528 kb on - strand, within argF at 3994.711 kb on + strand, within argF at 3994.734 kb on + strand, within argF at 3994.734 kb on + strand, within argF at 3994.914 kb on + strand, within argF at 3994.914 kb on + strand, within argF at 3994.914 kb on + strand, within argF at 3994.914 kb on + strand, within argF at 3994.914 kb on + strand, within argF at 3994.914 kb on + strand, within argF at 3994.915 kb on - strand, within argF at 3994.915 kb on - strand, within argF at 3994.915 kb on - strand, within argF at 3994.915 kb on - strand, within argF at 3994.915 kb on - strand, within argF at 3994.915 kb on - strand, within argF at 3994.915 kb on - strand, within argF at 3994.989 kb on + strand, within argF at 3994.989 kb on + strand, within argF at 3995.290 kb on - strand at 3995.318 kb on + strand at 3995.328 kb on + strand at 3995.328 kb on + strand at 3995.466 kb on + strand, within rraB at 3995.466 kb on + strand, within rraB at 3995.469 kb on - strand, within rraB at 3995.471 kb on + strand, within rraB at 3995.695 kb on - strand, within rraB at 3995.695 kb on - strand, within rraB at 3995.712 kb on + strand, within rraB at 3995.712 kb on + strand, within rraB at 3995.712 kb on + strand, within rraB at 3995.713 kb on - strand, within rraB at 3995.747 kb on + strand, within rraB at 3995.748 kb on - strand at 3995.898 kb on + strand at 3995.994 kb on - strand, within LU632_RS20910 at 3995.999 kb on + strand, within LU632_RS20910 at 3996.067 kb on + strand, within LU632_RS20910 at 3996.068 kb on - strand, within LU632_RS20910 at 3996.098 kb on + strand, within LU632_RS20910 at 3996.144 kb on + strand, within LU632_RS20910 at 3996.245 kb on + strand, within LU632_RS20910 at 3996.245 kb on + strand, within LU632_RS20910 at 3996.246 kb on - strand, within LU632_RS20910 at 3996.306 kb on + strand, within LU632_RS20910 at 3996.362 kb on + strand, within LU632_RS20910 at 3996.362 kb on + strand, within LU632_RS20910 at 3996.362 kb on + strand, within LU632_RS20910 at 3996.362 kb on + strand, within LU632_RS20910 at 3996.399 kb on + strand, within LU632_RS20910 at 3996.399 kb on + strand, within LU632_RS20910 at 3996.399 kb on + strand, within LU632_RS20910 at 3996.400 kb on - strand, within LU632_RS20910 at 3996.400 kb on - strand, within LU632_RS20910 at 3996.400 kb on - strand, within LU632_RS20910 at 3996.400 kb on - strand, within LU632_RS20910 at 3996.412 kb on + strand, within LU632_RS20910 at 3996.563 kb on + strand, within LU632_RS20910 at 3996.649 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Melon; plant sample=M2; plant location=P2 remove 3,994,427 + argF LU632_RS20900 0.22 -3.7 3,994,528 - argF LU632_RS20900 0.32 -2.7 3,994,711 + argF LU632_RS20900 0.50 -1.6 3,994,734 + argF LU632_RS20900 0.52 -1.8 3,994,734 + argF LU632_RS20900 0.52 -0.8 3,994,914 + argF LU632_RS20900 0.70 -4.8 3,994,914 + argF LU632_RS20900 0.70 -1.5 3,994,914 + argF LU632_RS20900 0.70 -3.5 3,994,914 + argF LU632_RS20900 0.70 -1.8 3,994,914 + argF LU632_RS20900 0.70 -2.3 3,994,914 + argF LU632_RS20900 0.70 -2.3 3,994,915 - argF LU632_RS20900 0.70 -2.5 3,994,915 - argF LU632_RS20900 0.70 +0.2 3,994,915 - argF LU632_RS20900 0.70 -3.1 3,994,915 - argF LU632_RS20900 0.70 -0.8 3,994,915 - argF LU632_RS20900 0.70 -2.4 3,994,915 - argF LU632_RS20900 0.70 -2.3 3,994,915 - argF LU632_RS20900 0.70 -2.9 3,994,989 + argF LU632_RS20900 0.78 -2.5 3,994,989 + argF LU632_RS20900 0.78 -2.4 3,995,290 - -0.0 3,995,318 + +0.8 3,995,328 + -0.5 3,995,328 + +0.2 3,995,466 + rraB LU632_RS20905 0.22 -1.9 3,995,466 + rraB LU632_RS20905 0.22 -0.4 3,995,469 - rraB LU632_RS20905 0.23 +0.2 3,995,471 + rraB LU632_RS20905 0.24 -1.8 3,995,695 - rraB LU632_RS20905 0.77 -0.2 3,995,695 - rraB LU632_RS20905 0.77 -1.2 3,995,712 + rraB LU632_RS20905 0.81 +1.8 3,995,712 + rraB LU632_RS20905 0.81 -0.5 3,995,712 + rraB LU632_RS20905 0.81 -0.8 3,995,713 - rraB LU632_RS20905 0.82 -1.0 3,995,747 + rraB LU632_RS20905 0.90 +0.5 3,995,748 - +1.2 3,995,898 + +1.6 3,995,994 - LU632_RS20910 0.12 +1.1 3,995,999 + LU632_RS20910 0.13 -0.0 3,996,067 + LU632_RS20910 0.22 +0.4 3,996,068 - LU632_RS20910 0.22 +0.2 3,996,098 + LU632_RS20910 0.26 +0.0 3,996,144 + LU632_RS20910 0.32 +0.7 3,996,245 + LU632_RS20910 0.45 -1.8 3,996,245 + LU632_RS20910 0.45 -0.1 3,996,246 - LU632_RS20910 0.45 -0.6 3,996,306 + LU632_RS20910 0.53 +0.8 3,996,362 + LU632_RS20910 0.61 -1.8 3,996,362 + LU632_RS20910 0.61 -1.6 3,996,362 + LU632_RS20910 0.61 -1.0 3,996,362 + LU632_RS20910 0.61 +1.4 3,996,399 + LU632_RS20910 0.65 -0.8 3,996,399 + LU632_RS20910 0.65 +1.8 3,996,399 + LU632_RS20910 0.65 -1.9 3,996,400 - LU632_RS20910 0.66 +0.6 3,996,400 - LU632_RS20910 0.66 -1.0 3,996,400 - LU632_RS20910 0.66 -1.2 3,996,400 - LU632_RS20910 0.66 +1.2 3,996,412 + LU632_RS20910 0.67 +1.0 3,996,563 + LU632_RS20910 0.87 +1.0 3,996,649 + -0.6
Or see this region's nucleotide sequence