Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS20895

Experiment: plant=Melon; plant sample=M2; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M2; plant location=P2
3,991,681	+	kup	LU632_RS20890	0.63	-0.0
3,991,714	-	kup	LU632_RS20890	0.65	-1.0
3,991,782	+	kup	LU632_RS20890	0.68	+2.4
3,991,791	+	kup	LU632_RS20890	0.69	-0.8
3,991,791	+	kup	LU632_RS20890	0.69	-0.8
3,991,791	+	kup	LU632_RS20890	0.69	-0.5
3,991,792	-	kup	LU632_RS20890	0.69	-2.2
3,991,792	-	kup	LU632_RS20890	0.69	-0.2
3,991,792	-	kup	LU632_RS20890	0.69	-1.4
3,991,811	+	kup	LU632_RS20890	0.70	-1.0
3,991,811	+	kup	LU632_RS20890	0.70	-2.5
3,991,811	+	kup	LU632_RS20890	0.70	-0.7
3,991,812	-	kup	LU632_RS20890	0.70	+0.8
3,991,910	+	kup	LU632_RS20890	0.75	+0.9
3,991,910	+	kup	LU632_RS20890	0.75	-0.2
3,991,911	-	kup	LU632_RS20890	0.75	+1.2
3,991,950	-	kup	LU632_RS20890	0.77	+0.3
3,992,287	+				+1.8
3,992,287	+				+1.3
3,992,372	+				-1.1
3,992,406	+				-1.1
3,992,462	+				-0.4
3,992,476	+				-1.1
3,992,583	-				-0.5
3,992,583	-				-0.7
3,992,673	+				+0.8
3,992,673	+				+0.2
3,992,700	+				+4.8
3,992,700	+				+0.4
3,992,701	-				-2.0
3,992,701	-				-0.6
3,992,703	+				-0.1
3,992,703	+				-0.7
3,992,703	+				-3.1
3,992,703	+				-0.7
3,992,703	+				+0.0
3,992,704	-				+0.2
3,992,704	-				+0.1
3,992,704	-				-0.8
3,992,734	+				-0.8
3,992,734	+				-1.3
3,992,734	+				-0.3
3,992,735	-				+1.3
3,992,736	+				+0.4
3,992,736	+				+0.8
3,992,745	-				+0.2
3,992,791	-				-1.1
3,992,791	-				-0.3
3,992,899	+		LU632_RS20895	0.16	+1.4
3,992,899	+		LU632_RS20895	0.16	-0.8
3,992,899	+		LU632_RS20895	0.16	-1.1
3,992,900	-		LU632_RS20895	0.16	+1.0
3,992,900	-		LU632_RS20895	0.16	-0.4
3,992,901	+		LU632_RS20895	0.16	-0.0
3,992,908	+		LU632_RS20895	0.16	-0.3
3,992,909	-		LU632_RS20895	0.16	-0.1
3,992,991	+		LU632_RS20895	0.22	-0.3
3,993,007	+		LU632_RS20895	0.23	-0.8
3,993,028	+		LU632_RS20895	0.25	+0.2
3,993,028	+		LU632_RS20895	0.25	+1.0
3,993,028	+		LU632_RS20895	0.25	-0.2
3,993,029	-		LU632_RS20895	0.25	-1.2
3,993,029	-		LU632_RS20895	0.25	-0.9
3,993,029	-		LU632_RS20895	0.25	-0.1
3,993,073	-		LU632_RS20895	0.28	-0.5
3,993,387	+		LU632_RS20895	0.50	-0.2
3,993,549	-		LU632_RS20895	0.61	-0.2
3,993,549	-		LU632_RS20895	0.61	+0.8
3,993,689	-		LU632_RS20895	0.71	-1.0
3,993,716	-		LU632_RS20895	0.73	+0.1
3,993,769	-		LU632_RS20895	0.76	+1.3
3,993,781	+		LU632_RS20895	0.77	-1.4
3,993,781	+		LU632_RS20895	0.77	-0.8
3,993,782	-		LU632_RS20895	0.77	-1.8
3,993,782	-		LU632_RS20895	0.77	-0.2
3,993,782	-		LU632_RS20895	0.77	-1.0
3,993,782	-		LU632_RS20895	0.77	-0.4
3,993,821	+		LU632_RS20895	0.80	+0.2
3,993,822	-		LU632_RS20895	0.80	+1.0
3,993,908	+		LU632_RS20895	0.86	+0.2
3,993,909	-		LU632_RS20895	0.86	-0.6
3,993,912	+		LU632_RS20895	0.86	-0.7
3,993,912	+		LU632_RS20895	0.86	+0.1
3,993,913	-		LU632_RS20895	0.86	+0.1
3,993,913	-		LU632_RS20895	0.86	+0.2
3,993,974	+				-0.7
3,993,974	+				+2.5
3,994,114	-				-2.3
3,994,114	-				-0.1
3,994,148	+				+0.1
3,994,148	+				-0.8
3,994,169	+				+1.0
3,994,175	-				+0.7
3,994,250	-				-1.6
3,994,338	+	argF	LU632_RS20900	0.13	+0.2
3,994,339	-	argF	LU632_RS20900	0.13	-2.1
3,994,339	-	argF	LU632_RS20900	0.13	-0.8
3,994,427	+	argF	LU632_RS20900	0.22	-3.7
3,994,528	-	argF	LU632_RS20900	0.32	-2.7
3,994,711	+	argF	LU632_RS20900	0.50	-1.6
3,994,734	+	argF	LU632_RS20900	0.52	-1.8
3,994,734	+	argF	LU632_RS20900	0.52	-0.8
3,994,914	+	argF	LU632_RS20900	0.70	-4.8
3,994,914	+	argF	LU632_RS20900	0.70	-1.5
3,994,914	+	argF	LU632_RS20900	0.70	-3.5
3,994,914	+	argF	LU632_RS20900	0.70	-1.8
3,994,914	+	argF	LU632_RS20900	0.70	-2.3
3,994,914	+	argF	LU632_RS20900	0.70	-2.3
3,994,915	-	argF	LU632_RS20900	0.70	-2.5
3,994,915	-	argF	LU632_RS20900	0.70	+0.2
3,994,915	-	argF	LU632_RS20900	0.70	-3.1
3,994,915	-	argF	LU632_RS20900	0.70	-0.8
3,994,915	-	argF	LU632_RS20900	0.70	-2.4
3,994,915	-	argF	LU632_RS20900	0.70	-2.3
3,994,915	-	argF	LU632_RS20900	0.70	-2.9
3,994,989	+	argF	LU632_RS20900	0.78	-2.5
3,994,989	+	argF	LU632_RS20900	0.78	-2.4