Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS20725

Experiment: plant=Melon; plant sample=M2; plant location=P2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntdnaG and rpoD are separated by 310 nucleotidesrpoD and LU632_RS20730 are separated by 411 nucleotides LU632_RS20720: dnaG - DNA primase, at 3,950,503 to 3,952,260 dnaG LU632_RS20725: rpoD - RNA polymerase sigma factor RpoD, at 3,952,571 to 3,954,412 rpoD LU632_RS20730: LU632_RS20730 - IS3 family transposase, at 3,954,824 to 3,956,024 _RS20730 Position (kb) 3952 3953 3954 3955Strain fitness (log2 ratio) -2 -1 0 1 2at 3952.281 kb on + strandat 3952.347 kb on + strandat 3952.374 kb on + strandat 3954.423 kb on + strandat 3954.423 kb on + strandat 3954.668 kb on + strandat 3954.673 kb on - strandat 3954.704 kb on + strandat 3954.759 kb on + strandat 3954.760 kb on - strandat 3954.760 kb on - strandat 3954.815 kb on - strandat 3954.815 kb on - strandat 3954.830 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction plant=Melon; plant sample=M2; plant location=P2
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3,952,281 + -1.2
3,952,347 + -1.2
3,952,374 + -2.1
3,954,423 + -2.4
3,954,423 + -0.7
3,954,668 + -0.8
3,954,673 - +1.9
3,954,704 + +0.5
3,954,759 + -0.4
3,954,760 - +0.9
3,954,760 - +0.7
3,954,815 - +1.9
3,954,815 - -0.1
3,954,830 - +0.1

Or see this region's nucleotide sequence