Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS20065

Experiment: plant=Melon; plant sample=M2; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M2; plant location=P2
3,820,542	+	mrcB	LU632_RS20060	0.65	-2.0
3,820,542	+	mrcB	LU632_RS20060	0.65	-0.5
3,820,544	+	mrcB	LU632_RS20060	0.65	-1.2
3,820,544	+	mrcB	LU632_RS20060	0.65	+0.5
3,820,544	+	mrcB	LU632_RS20060	0.65	-1.2
3,820,545	+	mrcB	LU632_RS20060	0.65	-1.6
3,820,545	-	mrcB	LU632_RS20060	0.65	+0.7
3,820,545	-	mrcB	LU632_RS20060	0.65	+0.4
3,820,545	-	mrcB	LU632_RS20060	0.65	+0.1
3,820,554	+	mrcB	LU632_RS20060	0.66	+0.8
3,820,706	+	mrcB	LU632_RS20060	0.72	-2.0
3,820,809	+	mrcB	LU632_RS20060	0.76	-0.8
3,820,810	-	mrcB	LU632_RS20060	0.76	+0.8
3,820,810	-	mrcB	LU632_RS20060	0.76	-0.9
3,820,965	+	mrcB	LU632_RS20060	0.82	+0.2
3,820,965	+	mrcB	LU632_RS20060	0.82	-2.8
3,820,966	-	mrcB	LU632_RS20060	0.82	-1.1
3,820,966	-	mrcB	LU632_RS20060	0.82	-0.8
3,821,021	+	mrcB	LU632_RS20060	0.84	-0.7
3,821,099	+	mrcB	LU632_RS20060	0.87	-0.8
3,821,100	-	mrcB	LU632_RS20060	0.88	+0.7
3,821,101	+	mrcB	LU632_RS20060	0.88	-0.4
3,821,101	+	mrcB	LU632_RS20060	0.88	-1.0
3,821,101	+	mrcB	LU632_RS20060	0.88	-0.8
3,821,102	-	mrcB	LU632_RS20060	0.88	+0.2
3,821,102	-	mrcB	LU632_RS20060	0.88	-0.3
3,821,102	-	mrcB	LU632_RS20060	0.88	+1.8
3,821,102	-	mrcB	LU632_RS20060	0.88	-2.3
3,821,190	+				+0.8
3,821,215	+				-1.0
3,821,881	-	hrpB	LU632_RS20065	0.15	+1.8
3,821,911	-	hrpB	LU632_RS20065	0.17	+0.8
3,821,911	-	hrpB	LU632_RS20065	0.17	-0.0
3,821,973	+	hrpB	LU632_RS20065	0.19	-0.9
3,821,974	-	hrpB	LU632_RS20065	0.19	+0.2
3,822,300	+	hrpB	LU632_RS20065	0.33	-0.7
3,822,302	+	hrpB	LU632_RS20065	0.33	+1.6
3,822,302	+	hrpB	LU632_RS20065	0.33	+1.0
3,822,302	+	hrpB	LU632_RS20065	0.33	+1.1
3,822,303	-	hrpB	LU632_RS20065	0.33	+0.1
3,822,303	-	hrpB	LU632_RS20065	0.33	-0.4
3,822,333	+	hrpB	LU632_RS20065	0.34	-0.5
3,822,359	-	hrpB	LU632_RS20065	0.35	-2.5
3,822,570	+	hrpB	LU632_RS20065	0.44	+0.6
3,822,570	+	hrpB	LU632_RS20065	0.44	+0.4
3,822,822	+	hrpB	LU632_RS20065	0.54	+0.2
3,822,891	+	hrpB	LU632_RS20065	0.57	+1.1
3,822,892	-	hrpB	LU632_RS20065	0.57	-1.1
3,822,949	-	hrpB	LU632_RS20065	0.59	+1.1
3,823,107	-	hrpB	LU632_RS20065	0.66	+0.0
3,823,211	-	hrpB	LU632_RS20065	0.70	-0.4
3,823,623	+	hrpB	LU632_RS20065	0.87	+0.9
3,823,624	-	hrpB	LU632_RS20065	0.87	-0.5
3,823,640	+	hrpB	LU632_RS20065	0.87	+0.2
3,823,788	+				-1.0
3,823,872	-				+1.2
3,823,872	-				-1.4
3,823,953	-				-0.3
3,823,990	+				+1.2
3,823,990	+				-0.9
3,823,991	-				-0.7
3,824,083	+	thpR	LU632_RS20070	0.11	+2.9
3,824,083	+	thpR	LU632_RS20070	0.11	-0.2
3,824,083	+	thpR	LU632_RS20070	0.11	-0.5
3,824,203	-	thpR	LU632_RS20070	0.33	+0.6
3,824,398	+	thpR	LU632_RS20070	0.69	+0.5
3,824,399	-	thpR	LU632_RS20070	0.69	-0.2
3,824,466	-	thpR	LU632_RS20070	0.82	+0.6
3,824,485	-	thpR	LU632_RS20070	0.85	+0.2
3,824,519	+				+1.8
3,824,521	+				+0.8
3,824,521	+				-0.2
3,824,521	+				-0.1
3,824,522	-				+3.9
3,824,667	+	sfsA	LU632_RS20075	0.15	+0.1
3,824,717	-	sfsA	LU632_RS20075	0.22	-1.5
3,824,799	+	sfsA	LU632_RS20075	0.34	+0.9
3,824,803	-	sfsA	LU632_RS20075	0.34	-2.2
3,824,825	+	sfsA	LU632_RS20075	0.38	-0.7
3,824,897	-	sfsA	LU632_RS20075	0.48	+0.4