Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS19995

Experiment: plant=Melon; plant sample=M2; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M2; plant location=P2
3,802,755	-				-0.6
3,802,846	+				-0.2
3,802,846	+				+1.8
3,802,923	-				-1.4
3,802,923	-				-0.5
3,802,923	-				+2.0
3,803,077	+				+1.0
3,803,077	+				+0.5
3,803,077	+				+3.6
3,803,078	-				+2.2
3,803,078	-				+2.5
3,803,081	+				-1.4
3,803,082	-				+2.2
3,803,082	-				+0.5
3,803,082	-				+2.5
3,803,082	-				-0.9
3,803,168	-		LU632_RS19990	0.23	+2.0
3,803,175	-		LU632_RS19990	0.25	+2.0
3,803,226	-		LU632_RS19990	0.38	-0.5
3,803,402	+		LU632_RS19990	0.82	-0.8
3,803,417	-		LU632_RS19990	0.86	-0.1
3,803,417	-		LU632_RS19990	0.86	-1.3
3,803,516	+				+1.2
3,803,679	+				+0.5
3,803,679	+				+0.2
3,803,680	-				+0.2
3,803,683	-				-0.4
3,803,683	-				-0.2
3,803,691	+		LU632_RS19995	0.11	+1.2
3,803,693	+		LU632_RS19995	0.11	+0.6
3,803,693	+		LU632_RS19995	0.11	-0.1
3,803,693	+		LU632_RS19995	0.11	+0.1
3,803,693	+		LU632_RS19995	0.11	-1.7
3,803,693	+		LU632_RS19995	0.11	+0.8
3,803,693	+		LU632_RS19995	0.11	+1.5
3,803,694	-		LU632_RS19995	0.11	+0.2
3,803,694	-		LU632_RS19995	0.11	-2.9
3,803,694	-		LU632_RS19995	0.11	+1.4
3,803,694	-		LU632_RS19995	0.11	-0.8
3,803,694	-		LU632_RS19995	0.11	-0.5
3,803,694	-		LU632_RS19995	0.11	-3.0
3,803,694	-		LU632_RS19995	0.11	+1.1
3,803,694	-		LU632_RS19995	0.11	+2.8
3,803,696	-		LU632_RS19995	0.11	+1.4
3,803,734	-		LU632_RS19995	0.14	+0.5
3,803,876	+		LU632_RS19995	0.27	+1.1
3,803,877	-		LU632_RS19995	0.27	+1.4
3,803,881	-		LU632_RS19995	0.27	-1.5
3,803,881	-		LU632_RS19995	0.27	+1.1
3,803,881	-		LU632_RS19995	0.27	+0.8
3,803,885	-		LU632_RS19995	0.27	-0.0
3,804,078	+		LU632_RS19995	0.44	-0.3
3,804,079	-		LU632_RS19995	0.44	-0.1
3,804,079	-		LU632_RS19995	0.44	-0.2
3,804,132	+		LU632_RS19995	0.49	+0.2
3,804,310	-		LU632_RS19995	0.64	+1.4
3,804,399	+		LU632_RS19995	0.72	+0.0
3,804,651	+				+0.3
3,804,652	-				-0.1
3,804,716	+				-2.4
3,804,716	+				-0.9
3,804,716	+				-0.5
3,804,717	-				+4.7
3,804,749	+				-1.1
3,804,750	-				+0.4
3,804,769	+				+1.8
3,804,769	+				+0.5
3,804,832	+				+1.0
3,804,920	-				+0.9
3,805,021	+				-0.0
3,805,025	-				-0.1
3,805,100	-				-0.9
3,805,166	+				+0.5
3,805,199	+				-1.8
3,805,201	+				+1.7
3,805,201	+				-0.1
3,805,201	+				-1.5
3,805,201	+				-0.7
3,805,201	+				-0.2
3,805,201	+				-1.4
3,805,201	+				-1.3
3,805,201	+				-0.3
3,805,202	-				+0.4
3,805,202	-				+1.9
3,805,202	-				-1.3
3,805,202	-				-1.5
3,805,202	-				-2.4
3,805,202	-				-1.8
3,805,203	+				-0.4
3,805,203	+				-2.2
3,805,203	+				+0.5
3,805,203	+				-0.3
3,805,203	+				-1.2
3,805,203	+				+0.8
3,805,203	+				-0.5
3,805,203	+				-0.8
3,805,204	-				-0.2
3,805,204	-				+0.5
3,805,224	+				-1.9
3,805,400	+	degP	LU632_RS20000	0.15	-2.0
3,805,401	-	degP	LU632_RS20000	0.15	-0.3
3,805,408	-	degP	LU632_RS20000	0.16	-2.8
3,805,433	+	degP	LU632_RS20000	0.17	-0.2
3,805,434	-	degP	LU632_RS20000	0.18	-0.9
3,805,465	-	degP	LU632_RS20000	0.20	+0.1