Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS19735

Experiment: plant=Melon; plant sample=M2; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M2; plant location=P2
3,748,644	-				-0.3
3,748,650	-				+3.2
3,748,689	+				-1.5
3,748,713	+				-1.6
3,748,713	+				+0.8
3,748,714	-				+0.8
3,748,714	-				+0.3
3,748,793	-				+1.2
3,748,947	+				+1.8
3,749,107	-				-0.7
3,749,128	+				-0.2
3,749,133	-				+0.1
3,749,214	+	mqo	LU632_RS19735	0.12	-2.5
3,749,241	-	mqo	LU632_RS19735	0.14	+5.5
3,749,254	+	mqo	LU632_RS19735	0.15	+2.0
3,749,255	-	mqo	LU632_RS19735	0.15	+1.8
3,749,255	-	mqo	LU632_RS19735	0.15	+1.0
3,749,304	+	mqo	LU632_RS19735	0.18	-0.6
3,749,506	-	mqo	LU632_RS19735	0.31	-0.2
3,749,682	-	mqo	LU632_RS19735	0.42	-0.2
3,749,774	-	mqo	LU632_RS19735	0.47	-1.0
3,749,774	-	mqo	LU632_RS19735	0.47	-0.3
3,749,921	+	mqo	LU632_RS19735	0.57	-0.3
3,749,921	+	mqo	LU632_RS19735	0.57	+0.5
3,749,921	+	mqo	LU632_RS19735	0.57	+2.1
3,749,922	-	mqo	LU632_RS19735	0.57	+0.4
3,749,922	-	mqo	LU632_RS19735	0.57	-0.8
3,750,234	-	mqo	LU632_RS19735	0.76	-0.0
3,750,292	-	mqo	LU632_RS19735	0.80	-1.4
3,750,400	-	mqo	LU632_RS19735	0.87	+0.2
3,750,453	+				-0.7
3,750,457	-				-1.2
3,750,487	-				-0.7
3,750,547	-				-0.2
3,750,706	+				-0.3
3,750,706	+				-0.3
3,750,723	-				+3.4
3,750,747	+				+0.5
3,750,754	-				+0.6
3,750,754	-				-1.7
3,750,754	-				-0.8
3,750,791	+		LU632_RS19740	0.17	+1.4
3,750,791	+		LU632_RS19740	0.17	-0.3
3,750,792	-		LU632_RS19740	0.17	+1.7
3,750,792	-		LU632_RS19740	0.17	+0.8
3,750,794	-		LU632_RS19740	0.18	+1.2
3,750,817	+		LU632_RS19740	0.22	+2.6
3,750,857	-		LU632_RS19740	0.30	-0.4
3,750,859	-		LU632_RS19740	0.31	+1.0
3,750,859	-		LU632_RS19740	0.31	+0.4
3,750,881	+		LU632_RS19740	0.35	-0.2
3,750,881	+		LU632_RS19740	0.35	-1.5
3,751,001	+		LU632_RS19740	0.59	+2.5
3,751,002	-		LU632_RS19740	0.59	-0.5
3,751,005	+		LU632_RS19740	0.60	+1.6
3,751,005	+		LU632_RS19740	0.60	+0.1
3,751,009	+		LU632_RS19740	0.61	-0.7
3,751,009	+		LU632_RS19740	0.61	-0.0
3,751,153	+		LU632_RS19740	0.90	+1.1
3,751,196	-				-1.4
3,751,215	+				-0.1
3,751,215	+				-0.5
3,751,215	+				-2.1
3,751,216	-				-1.7
3,751,216	-				+0.2
3,751,216	-				+0.9
3,751,218	+				+0.6
3,751,219	-				+0.2
3,751,290	+				+1.0
3,751,291	-				-1.0
3,751,502	-		LU632_RS19745	0.41	-0.5
3,751,528	-		LU632_RS19745	0.48	-0.4
3,751,583	+		LU632_RS19745	0.63	+0.7