Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS19265

Experiment: plant=Melon; plant sample=M2; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M2; plant location=P2
3,642,912	+				-0.6
3,642,912	+				-0.7
3,642,913	-				-0.6
3,642,913	-				-1.3
3,643,098	-				+0.9
3,643,112	-				+1.5
3,643,230	+				-0.3
3,643,231	-				+0.9
3,643,268	+				+0.6
3,643,269	-				-0.2
3,643,269	-				+0.9
3,643,271	+				+0.6
3,643,271	+				-1.1
3,643,272	-				-0.8
3,643,274	-				+0.2
3,643,464	-	panM	LU632_RS19260	0.52	-1.0
3,643,572	+	panM	LU632_RS19260	0.79	-0.4
3,643,574	+	panM	LU632_RS19260	0.79	-1.3
3,643,575	-	panM	LU632_RS19260	0.80	-1.8
3,643,598	+	panM	LU632_RS19260	0.85	+1.3
3,643,694	-				-0.2
3,643,761	+				+0.3
3,643,762	-				+1.5
3,644,644	-				+0.4
3,644,814	-				-0.4
3,644,864	+				+4.1
3,644,865	-				-0.4
3,644,867	+				-0.1
3,644,867	+				+0.2
3,644,867	+				+0.9
3,644,868	-				-0.8
3,644,904	-				+0.5
3,644,913	+				-2.1
3,644,914	-				+0.9
3,645,067	-	ftsX	LU632_RS19270	0.18	-2.4
3,645,096	+	ftsX	LU632_RS19270	0.21	-2.4
3,645,210	-	ftsX	LU632_RS19270	0.32	-2.9
3,645,259	-	ftsX	LU632_RS19270	0.37	-1.3
3,645,261	+	ftsX	LU632_RS19270	0.37	-3.3
3,645,261	+	ftsX	LU632_RS19270	0.37	-0.4
3,645,262	-	ftsX	LU632_RS19270	0.37	-2.0
3,645,262	-	ftsX	LU632_RS19270	0.37	-0.3
3,645,262	-	ftsX	LU632_RS19270	0.37	-4.2
3,645,262	-	ftsX	LU632_RS19270	0.37	-1.7
3,645,383	+	ftsX	LU632_RS19270	0.49	-2.3
3,645,384	-	ftsX	LU632_RS19270	0.50	-0.9
3,645,425	+	ftsX	LU632_RS19270	0.54	+0.7
3,645,426	-	ftsX	LU632_RS19270	0.54	-3.3
3,645,426	-	ftsX	LU632_RS19270	0.54	-2.9
3,645,426	-	ftsX	LU632_RS19270	0.54	-1.0
3,645,428	+	ftsX	LU632_RS19270	0.54	-4.3
3,645,461	+	ftsX	LU632_RS19270	0.57	-2.2
3,645,461	+	ftsX	LU632_RS19270	0.57	-3.5
3,645,526	+	ftsX	LU632_RS19270	0.64	-1.1
3,645,527	-	ftsX	LU632_RS19270	0.64	-2.8