Experiment: plant=Melon; plant sample=M2; plant location=P2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS18550 and LU632_RS18555 are separated by 152 nucleotides LU632_RS18555 and LU632_RS18560 are separated by 2 nucleotides LU632_RS18560 and LU632_RS18565 are separated by 187 nucleotides LU632_RS18565 and LU632_RS18570 overlap by 4 nucleotides LU632_RS18570 and LU632_RS18575 are separated by 250 nucleotides
LU632_RS18550: LU632_RS18550 - IS3 family transposase, at 3,510,490 to 3,511,610
_RS18550
LU632_RS18555: LU632_RS18555 - hypothetical protein, at 3,511,763 to 3,512,050
_RS18555
LU632_RS18560: LU632_RS18560 - hypothetical protein, at 3,512,053 to 3,512,331
_RS18560
LU632_RS18565: LU632_RS18565 - IS1 family transposase, at 3,512,519 to 3,513,022
_RS18565
LU632_RS18570: LU632_RS18570 - hypothetical protein, at 3,513,019 to 3,513,036
_RS18570
LU632_RS18575: LU632_RS18575 - tyrosine-type recombinase/integrase, at 3,513,287 to 3,514,224
_RS18575
Position (kb) 3512
3513 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 3511.694 kb on - strand at 3511.718 kb on - strand at 3511.728 kb on + strand at 3511.728 kb on + strand at 3511.729 kb on - strand at 3511.729 kb on - strand at 3511.768 kb on - strand at 3511.843 kb on - strand, within LU632_RS18555 at 3511.855 kb on - strand, within LU632_RS18555 at 3511.958 kb on - strand, within LU632_RS18555 at 3512.172 kb on + strand, within LU632_RS18560 at 3512.385 kb on + strand at 3512.386 kb on - strand at 3512.396 kb on + strand at 3512.484 kb on + strand at 3512.835 kb on + strand, within LU632_RS18565 at 3512.835 kb on + strand, within LU632_RS18565 at 3512.835 kb on + strand, within LU632_RS18565 at 3513.276 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Melon; plant sample=M2; plant location=P2 remove 3,511,694 - -3.2 3,511,718 - +0.5 3,511,728 + +0.9 3,511,728 + +0.9 3,511,729 - +0.1 3,511,729 - -1.3 3,511,768 - +0.4 3,511,843 - LU632_RS18555 0.28 -0.6 3,511,855 - LU632_RS18555 0.32 -0.2 3,511,958 - LU632_RS18555 0.68 +1.4 3,512,172 + LU632_RS18560 0.43 +0.3 3,512,385 + +0.0 3,512,386 - +0.6 3,512,396 + -1.1 3,512,484 + -0.0 3,512,835 + LU632_RS18565 0.63 -0.4 3,512,835 + LU632_RS18565 0.63 -1.2 3,512,835 + LU632_RS18565 0.63 -0.2 3,513,276 - +3.8
Or see this region's nucleotide sequence