Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS18140

Experiment: plant=Melon; plant sample=M2; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M2; plant location=P2
3,428,522	+		LU632_RS18135	0.68	+0.8
3,428,748	-		LU632_RS18135	0.77	+0.4
3,428,748	-		LU632_RS18135	0.77	+0.5
3,428,748	-		LU632_RS18135	0.77	-0.4
3,428,752	-		LU632_RS18135	0.77	-0.7
3,428,862	+		LU632_RS18135	0.82	+0.5
3,428,876	+		LU632_RS18135	0.82	+0.3
3,428,881	-		LU632_RS18135	0.83	+0.1
3,429,024	-		LU632_RS18135	0.88	-0.5
3,429,054	-		LU632_RS18135	0.90	-0.2
3,429,183	+				+0.1
3,429,183	+				+0.4
3,429,197	-				-0.4
3,429,206	-				-1.7
3,429,219	-				-2.3
3,429,228	+				+1.0
3,429,229	-				-0.3
3,429,229	-				-1.1
3,429,240	+				+0.8
3,429,241	-				+1.2
3,429,241	-				-0.8
3,429,241	-				+0.9
3,429,850	+	apt	LU632_RS18140	0.67	+3.2
3,429,851	-	apt	LU632_RS18140	0.67	-0.2
3,429,862	-	apt	LU632_RS18140	0.69	+0.4
3,429,892	+	apt	LU632_RS18140	0.74	+1.0
3,429,990	+				-0.8
3,430,052	-				-1.2
3,430,205	+				+0.8
3,430,229	+				-1.8
3,430,230	-				+1.0
3,430,651	-		LU632_RS18145	0.78	-0.2
3,430,765	+				+0.3
3,430,780	-				-0.0
3,430,980	-				-0.4
3,430,985	-				-2.0
3,431,002	+				+0.1
3,431,002	+				-1.7
3,431,003	-				+0.8