Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS18135

Experiment: plant=Melon; plant sample=M2; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M2; plant location=P2
3,426,046	+		LU632_RS18120	0.61	-0.3
3,426,046	+		LU632_RS18120	0.61	-0.8
3,426,092	+		LU632_RS18120	0.79	-1.0
3,426,093	-		LU632_RS18120	0.79	-4.7
3,426,216	+		LU632_RS18125	0.25	+0.5
3,426,216	+		LU632_RS18125	0.25	-0.7
3,426,216	+		LU632_RS18125	0.25	-2.0
3,426,216	+		LU632_RS18125	0.25	-0.5
3,426,216	+		LU632_RS18125	0.25	+0.2
3,426,216	+		LU632_RS18125	0.25	+1.1
3,426,216	+		LU632_RS18125	0.25	+0.2
3,426,217	-		LU632_RS18125	0.25	+0.8
3,426,217	-		LU632_RS18125	0.25	-1.0
3,426,217	-		LU632_RS18125	0.25	+0.4
3,426,479	+				+1.3
3,426,479	+				-0.2
3,426,479	+				+0.1
3,426,479	+				+0.9
3,426,479	+				+0.6
3,426,483	-				+1.3
3,426,483	-				+0.8
3,426,659	-				+0.6
3,426,661	-				+1.8
3,426,860	+				-1.2
3,426,860	+				+0.2
3,426,861	-				-0.4
3,427,034	+				-2.5
3,427,035	-				+0.8
3,427,185	-		LU632_RS18135	0.14	+0.6
3,427,185	-		LU632_RS18135	0.14	+1.2
3,427,195	+		LU632_RS18135	0.14	+1.2
3,427,196	-		LU632_RS18135	0.14	-1.1
3,427,205	+		LU632_RS18135	0.14	-1.0
3,427,205	+		LU632_RS18135	0.14	-1.4
3,427,206	-		LU632_RS18135	0.14	-2.4
3,427,334	-		LU632_RS18135	0.20	-1.7
3,427,449	-		LU632_RS18135	0.24	-0.8
3,427,610	+		LU632_RS18135	0.31	+1.5
3,427,611	-		LU632_RS18135	0.31	-0.0
3,427,611	-		LU632_RS18135	0.31	+1.2
3,427,632	+		LU632_RS18135	0.32	-0.4
3,427,632	+		LU632_RS18135	0.32	-0.8
3,427,632	+		LU632_RS18135	0.32	-1.0
3,427,632	+		LU632_RS18135	0.32	-0.6
3,427,633	-		LU632_RS18135	0.32	-0.6
3,427,673	+		LU632_RS18135	0.33	+0.8
3,427,674	-		LU632_RS18135	0.33	+0.4
3,427,675	+		LU632_RS18135	0.33	-0.7
3,427,676	-		LU632_RS18135	0.34	+0.8
3,427,676	-		LU632_RS18135	0.34	-0.5
3,427,908	+		LU632_RS18135	0.43	+0.2
3,427,908	+		LU632_RS18135	0.43	+2.2
3,427,908	+		LU632_RS18135	0.43	+0.4
3,427,909	-		LU632_RS18135	0.43	-0.1
3,427,909	-		LU632_RS18135	0.43	-2.0
3,427,968	+		LU632_RS18135	0.45	+1.4
3,427,969	-		LU632_RS18135	0.45	-0.2
3,428,016	-		LU632_RS18135	0.47	-1.1
3,428,230	+		LU632_RS18135	0.56	-0.6
3,428,231	-		LU632_RS18135	0.56	+0.8
3,428,231	-		LU632_RS18135	0.56	-0.6
3,428,240	+		LU632_RS18135	0.56	+0.2
3,428,283	+		LU632_RS18135	0.58	-0.1
3,428,284	-		LU632_RS18135	0.58	-0.4
3,428,284	-		LU632_RS18135	0.58	+0.8
3,428,343	-		LU632_RS18135	0.61	+0.8
3,428,522	+		LU632_RS18135	0.68	+0.8
3,428,748	-		LU632_RS18135	0.77	+0.4
3,428,748	-		LU632_RS18135	0.77	+0.5
3,428,748	-		LU632_RS18135	0.77	-0.4
3,428,752	-		LU632_RS18135	0.77	-0.7
3,428,862	+		LU632_RS18135	0.82	+0.5
3,428,876	+		LU632_RS18135	0.82	+0.3
3,428,881	-		LU632_RS18135	0.83	+0.1
3,429,024	-		LU632_RS18135	0.88	-0.5
3,429,054	-		LU632_RS18135	0.90	-0.2
3,429,183	+				+0.1
3,429,183	+				+0.4
3,429,197	-				-0.4
3,429,206	-				-1.7
3,429,219	-				-2.3
3,429,228	+				+1.0
3,429,229	-				-0.3
3,429,229	-				-1.1
3,429,240	+				+0.8
3,429,241	-				+1.2
3,429,241	-				-0.8
3,429,241	-				+0.9
3,429,850	+	apt	LU632_RS18140	0.67	+3.2
3,429,851	-	apt	LU632_RS18140	0.67	-0.2
3,429,862	-	apt	LU632_RS18140	0.69	+0.4
3,429,892	+	apt	LU632_RS18140	0.74	+1.0
3,429,990	+				-0.8
3,430,052	-				-1.2
3,430,205	+				+0.8
3,430,229	+				-1.8
3,430,230	-				+1.0