Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS17290

Experiment: plant=Melon; plant sample=M2; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M2; plant location=P2
3,247,437	+		LU632_RS17285	0.28	-0.1
3,247,437	+		LU632_RS17285	0.28	+0.7
3,247,437	+		LU632_RS17285	0.28	-1.7
3,247,438	-		LU632_RS17285	0.28	+0.7
3,247,438	-		LU632_RS17285	0.28	+1.5
3,247,443	+		LU632_RS17285	0.29	+1.0
3,247,527	+		LU632_RS17285	0.36	-0.6
3,247,738	-		LU632_RS17285	0.56	+1.7
3,247,810	-		LU632_RS17285	0.62	+0.4
3,247,810	-		LU632_RS17285	0.62	+1.7
3,247,868	+		LU632_RS17285	0.68	-0.3
3,247,898	+		LU632_RS17285	0.71	-0.4
3,248,115	+				+0.4
3,248,150	-				-0.8
3,248,237	+				-3.6
3,248,238	-				-0.7
3,248,255	-				+0.2
3,248,269	+				+0.5
3,248,270	-				+0.6
3,248,356	+				-0.5
3,248,356	+				-1.6
3,248,356	+				-2.3
3,248,356	+				-2.0
3,248,429	+				+2.3
3,248,430	-				-0.4
3,248,431	+				-1.2
3,248,469	+				+1.9
3,248,470	+				-0.1
3,248,471	-				-2.2
3,248,471	-				-0.3
3,248,498	+				-1.6
3,248,521	+		LU632_RS17290	0.11	-2.8
3,248,522	-		LU632_RS17290	0.11	+0.4
3,248,538	-		LU632_RS17290	0.12	+0.2
3,248,553	+		LU632_RS17290	0.13	+0.8
3,248,553	+		LU632_RS17290	0.13	-0.5
3,248,553	+		LU632_RS17290	0.13	+0.7
3,248,554	-		LU632_RS17290	0.13	+2.0
3,248,597	-		LU632_RS17290	0.16	+0.5
3,248,597	-		LU632_RS17290	0.16	-0.1
3,248,657	+		LU632_RS17290	0.20	-0.9
3,248,719	+		LU632_RS17290	0.24	+1.5
3,248,720	-		LU632_RS17290	0.25	+2.2
3,248,783	-		LU632_RS17290	0.29	-3.0
3,248,881	+		LU632_RS17290	0.35	-0.5
3,248,881	+		LU632_RS17290	0.35	-1.1
3,248,881	+		LU632_RS17290	0.35	+2.4
3,248,881	+		LU632_RS17290	0.35	-2.5
3,248,881	+		LU632_RS17290	0.35	-0.8
3,248,881	+		LU632_RS17290	0.35	-0.9
3,248,882	-		LU632_RS17290	0.36	-0.3
3,248,882	-		LU632_RS17290	0.36	+1.2
3,248,882	-		LU632_RS17290	0.36	+0.5
3,249,003	+		LU632_RS17290	0.44	-0.1
3,249,034	+		LU632_RS17290	0.46	-1.7
3,249,035	-		LU632_RS17290	0.46	-0.3
3,249,073	+		LU632_RS17290	0.48	-1.0
3,249,074	-		LU632_RS17290	0.49	+0.3
3,249,086	+		LU632_RS17290	0.49	+1.7
3,249,330	-		LU632_RS17290	0.66	-0.8
3,249,348	+		LU632_RS17290	0.67	-0.8
3,249,348	+		LU632_RS17290	0.67	+0.5
3,249,397	+		LU632_RS17290	0.70	-0.8
3,249,528	+		LU632_RS17290	0.79	-0.5
3,249,569	-		LU632_RS17290	0.82	+0.5
3,249,581	-		LU632_RS17290	0.83	-0.6
3,249,581	-		LU632_RS17290	0.83	-0.8
3,249,608	+		LU632_RS17290	0.85	-1.7
3,249,608	+		LU632_RS17290	0.85	-0.6
3,249,663	+		LU632_RS17290	0.88	-0.1
3,249,670	+		LU632_RS17290	0.89	-2.0
3,249,670	+		LU632_RS17290	0.89	-0.7
3,249,816	+				+2.1
3,249,817	-				-1.7
3,249,901	+				-1.3
3,249,915	+				-1.3
3,249,916	-				-0.3
3,249,916	-				+1.6
3,249,925	+				+0.2
3,249,929	-				-0.6
3,250,013	+				+0.9
3,250,014	-				-0.3
3,250,019	-				+2.0
3,250,189	-		LU632_RS17295	0.22	-0.5
3,250,264	+		LU632_RS17295	0.30	+1.7
3,250,265	-		LU632_RS17295	0.30	+1.6
3,250,272	+		LU632_RS17295	0.31	+0.6
3,250,273	-		LU632_RS17295	0.31	+0.2
3,250,273	-		LU632_RS17295	0.31	-0.7
3,250,494	-		LU632_RS17295	0.57	+1.5
3,250,507	-		LU632_RS17295	0.58	+0.7
3,250,507	-		LU632_RS17295	0.58	+0.8
3,250,565	+		LU632_RS17295	0.65	-0.3
3,250,565	+		LU632_RS17295	0.65	+3.8
3,250,566	-		LU632_RS17295	0.65	+0.9
3,250,566	-		LU632_RS17295	0.65	-1.1
3,250,566	-		LU632_RS17295	0.65	-0.6
3,250,566	-		LU632_RS17295	0.65	-2.3
3,250,567	+		LU632_RS17295	0.65	-0.3
3,250,567	+		LU632_RS17295	0.65	+0.5
3,250,567	+		LU632_RS17295	0.65	+1.4
3,250,567	+		LU632_RS17295	0.65	+2.7
3,250,568	-		LU632_RS17295	0.65	+0.7
3,250,568	-		LU632_RS17295	0.65	+2.0
3,250,568	-		LU632_RS17295	0.65	+0.9
3,250,568	-		LU632_RS17295	0.65	+0.5
3,250,568	-		LU632_RS17295	0.65	+0.7
3,250,568	-		LU632_RS17295	0.65	+1.6
3,250,736	+		LU632_RS17295	0.84	-1.6