Experiment: plant=Melon; plant sample=M2; plant location=P2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS16995 and LU632_RS17000 are separated by 52 nucleotides LU632_RS17000 and LU632_RS17005 are separated by 40 nucleotides LU632_RS17005 and tnpA are separated by 170 nucleotides tnpA and LU632_RS17015 are separated by 143 nucleotides
LU632_RS16995: LU632_RS16995 - IS481 family transposase, at 3,205,092 to 3,206,009
_RS16995
LU632_RS17000: LU632_RS17000 - IS3 family transposase, at 3,206,062 to 3,207,182
_RS17000
LU632_RS17005: LU632_RS17005 - helix-turn-helix domain-containing protein, at 3,207,223 to 3,207,357
_RS17005
LU632_RS17010: tnpA - IS200/IS605 family transposase, at 3,207,528 to 3,207,968
tnpA
LU632_RS17015: LU632_RS17015 - RnfH family protein, at 3,208,112 to 3,208,399
_RS17015
Position (kb) 3206
3207
3208 Strain fitness (log2 ratio) -1
0
1
2
3
4
5 at 3207.189 kb on + strand at 3207.189 kb on + strand at 3207.193 kb on + strand at 3207.193 kb on + strand at 3208.088 kb on + strand at 3208.095 kb on + strand at 3208.157 kb on - strand, within LU632_RS17015
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Melon; plant sample=M2; plant location=P2 remove 3,207,189 + +0.1 3,207,189 + -0.9 3,207,193 + -0.8 3,207,193 + +1.5 3,208,088 + +4.9 3,208,095 + +0.5 3,208,157 - LU632_RS17015 0.16 -0.6
Or see this region's nucleotide sequence