Experiment: plant=Melon; plant sample=M2; plant location=P2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt pssA and LU632_RS16930 are separated by 268 nucleotides LU632_RS16930 and clpB are separated by 235 nucleotides
LU632_RS16925: pssA - CDP-diacylglycerol--serine O-phosphatidyltransferase, at 3,189,344 to 3,190,699
pssA
LU632_RS16930: LU632_RS16930 - IS1 family transposase, at 3,190,968 to 3,191,666
_RS16930
LU632_RS16935: clpB - ATP-dependent chaperone ClpB, at 3,191,902 to 3,194,487
clpB
Position (kb) 3190
3191
3192 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 3190.718 kb on - strand at 3190.790 kb on + strand at 3190.847 kb on + strand at 3190.849 kb on + strand at 3190.872 kb on + strand at 3190.913 kb on - strand at 3191.693 kb on - strand at 3191.743 kb on + strand at 3191.750 kb on - strand at 3191.826 kb on + strand at 3191.904 kb on - strand at 3191.916 kb on + strand at 3191.916 kb on + strand at 3192.004 kb on - strand at 3192.072 kb on + strand at 3192.073 kb on - strand at 3192.073 kb on - strand at 3192.073 kb on - strand at 3192.084 kb on + strand at 3192.094 kb on - strand at 3192.094 kb on - strand at 3192.096 kb on - strand at 3192.118 kb on - strand at 3192.166 kb on - strand, within clpB at 3192.196 kb on + strand, within clpB at 3192.196 kb on + strand, within clpB at 3192.197 kb on - strand, within clpB at 3192.281 kb on - strand, within clpB at 3192.321 kb on + strand, within clpB at 3192.330 kb on + strand, within clpB at 3192.330 kb on + strand, within clpB at 3192.494 kb on + strand, within clpB at 3192.516 kb on + strand, within clpB at 3192.517 kb on - strand, within clpB at 3192.535 kb on + strand, within clpB at 3192.535 kb on + strand, within clpB at 3192.536 kb on - strand, within clpB at 3192.536 kb on - strand, within clpB at 3192.577 kb on - strand, within clpB at 3192.587 kb on - strand, within clpB at 3192.587 kb on - strand, within clpB at 3192.631 kb on - strand, within clpB at 3192.634 kb on + strand, within clpB at 3192.634 kb on + strand, within clpB at 3192.635 kb on - strand, within clpB at 3192.635 kb on - strand, within clpB
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Melon; plant sample=M2; plant location=P2 remove 3,190,718 - +1.5 3,190,790 + -0.0 3,190,847 + -1.0 3,190,849 + +1.5 3,190,872 + +2.3 3,190,913 - -2.2 3,191,693 - -2.4 3,191,743 + +1.2 3,191,750 - +1.1 3,191,826 + -1.1 3,191,904 - -0.4 3,191,916 + -0.6 3,191,916 + -0.8 3,192,004 - +1.2 3,192,072 + -1.9 3,192,073 - +1.1 3,192,073 - -1.5 3,192,073 - -0.1 3,192,084 + -0.1 3,192,094 - +0.1 3,192,094 - +0.7 3,192,096 - -1.0 3,192,118 - -0.2 3,192,166 - clpB LU632_RS16935 0.10 -0.7 3,192,196 + clpB LU632_RS16935 0.11 +0.1 3,192,196 + clpB LU632_RS16935 0.11 -1.8 3,192,197 - clpB LU632_RS16935 0.11 -1.3 3,192,281 - clpB LU632_RS16935 0.15 -2.7 3,192,321 + clpB LU632_RS16935 0.16 -0.6 3,192,330 + clpB LU632_RS16935 0.17 -0.1 3,192,330 + clpB LU632_RS16935 0.17 +1.2 3,192,494 + clpB LU632_RS16935 0.23 -0.8 3,192,516 + clpB LU632_RS16935 0.24 +1.0 3,192,517 - clpB LU632_RS16935 0.24 +1.6 3,192,535 + clpB LU632_RS16935 0.24 -2.9 3,192,535 + clpB LU632_RS16935 0.24 -2.1 3,192,536 - clpB LU632_RS16935 0.25 -0.2 3,192,536 - clpB LU632_RS16935 0.25 -1.5 3,192,577 - clpB LU632_RS16935 0.26 -0.6 3,192,587 - clpB LU632_RS16935 0.26 -1.3 3,192,587 - clpB LU632_RS16935 0.26 +0.3 3,192,631 - clpB LU632_RS16935 0.28 +1.6 3,192,634 + clpB LU632_RS16935 0.28 +1.9 3,192,634 + clpB LU632_RS16935 0.28 +0.3 3,192,635 - clpB LU632_RS16935 0.28 -1.8 3,192,635 - clpB LU632_RS16935 0.28 +0.0
Or see this region's nucleotide sequence