Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS16430

Experiment: plant=Melon; plant sample=M2; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M2; plant location=P2
3,109,243	+		LU632_RS16420	0.83	+1.2
3,109,271	+		LU632_RS16420	0.86	+0.9
3,109,272	-		LU632_RS16420	0.86	-0.6
3,109,275	-		LU632_RS16420	0.87	+0.1
3,109,277	+		LU632_RS16420	0.87	-1.0
3,109,278	-		LU632_RS16420	0.87	-0.8
3,109,280	+		LU632_RS16420	0.87	+0.1
3,109,398	-				-0.9
3,109,481	+				+0.8
3,109,490	+				-1.3
3,109,491	-				-0.8
3,109,502	+				+2.8
3,109,502	+				-1.5
3,109,561	-				+1.9
3,109,568	+				-0.5
3,109,569	-				-1.1
3,109,586	+		LU632_RS16425	0.10	-1.0
3,109,609	-		LU632_RS16425	0.15	-0.7
3,109,685	+		LU632_RS16425	0.33	-0.1
3,109,691	-		LU632_RS16425	0.34	-2.0
3,109,743	-		LU632_RS16425	0.47	-0.1
3,109,774	+		LU632_RS16425	0.54	+0.7
3,109,786	-		LU632_RS16425	0.57	-0.4
3,109,937	+				-2.3
3,109,938	-				-0.5
3,110,022	+				+0.3
3,110,023	-				+0.3
3,110,039	-				+0.1
3,110,101	-				-0.3
3,110,898	+				+0.3
3,110,926	-				+0.7
3,110,942	-				+0.5
3,110,942	-				+0.1
3,110,959	+				-2.1
3,110,991	-				+0.6
3,110,994	+				-0.5
3,111,436	-				-0.3
3,111,455	+				+2.0
3,111,487	+				-0.3
3,111,532	+				+1.0
3,111,609	-	pagP	LU632_RS16445	0.21	+1.5
3,111,616	+	pagP	LU632_RS16445	0.23	+0.1
3,111,616	+	pagP	LU632_RS16445	0.23	+2.7
3,111,617	-	pagP	LU632_RS16445	0.23	-1.3
3,111,617	-	pagP	LU632_RS16445	0.23	+1.2