Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS16140

Experiment: plant=Melon; plant sample=M2; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M2; plant location=P2
3,050,607	+				+0.4
3,050,608	-				-0.5
3,050,608	-				+3.1
3,050,613	-				-0.9
3,050,613	-				+1.2
3,050,718	-				+1.3
3,050,779	+	pxpA	LU632_RS16135	0.14	+0.5
3,050,854	-	pxpA	LU632_RS16135	0.25	-0.3
3,051,082	+	pxpA	LU632_RS16135	0.55	-1.3
3,051,083	-	pxpA	LU632_RS16135	0.56	-0.5
3,051,427	+				-1.5
3,051,492	+		LU632_RS16140	0.10	-1.1
3,051,493	-		LU632_RS16140	0.11	-0.3
3,051,534	-		LU632_RS16140	0.15	-1.2
3,051,569	+		LU632_RS16140	0.19	-0.9
3,051,757	+		LU632_RS16140	0.39	-1.6
3,051,758	-		LU632_RS16140	0.39	+0.7
3,051,789	-		LU632_RS16140	0.42	+0.8
3,051,999	-		LU632_RS16140	0.64	-0.3
3,052,167	+		LU632_RS16140	0.82	-0.9
3,052,381	+				-0.1
3,052,411	-	pxpB	LU632_RS16145	0.13	+0.5
3,052,532	-	pxpB	LU632_RS16145	0.32	-0.7
3,052,535	+	pxpB	LU632_RS16145	0.32	-1.6
3,052,535	+	pxpB	LU632_RS16145	0.32	+4.0
3,052,536	-	pxpB	LU632_RS16145	0.32	+0.7
3,052,536	-	pxpB	LU632_RS16145	0.32	-0.0
3,052,536	-	pxpB	LU632_RS16145	0.32	+0.1
3,052,536	-	pxpB	LU632_RS16145	0.32	+0.2
3,052,546	+	pxpB	LU632_RS16145	0.34	-0.6
3,052,547	-	pxpB	LU632_RS16145	0.34	-0.4
3,052,547	-	pxpB	LU632_RS16145	0.34	-1.2
3,052,547	-	pxpB	LU632_RS16145	0.34	+0.7
3,052,693	-	pxpB	LU632_RS16145	0.57	-1.6
3,052,976	-				-0.1
3,053,004	+				+0.4
3,053,004	+				-1.3
3,053,018	+				+0.3
3,053,018	+				-1.1
3,053,018	+				-0.6
3,053,019	-				+0.2
3,053,019	-				+0.5
3,053,019	-				-0.4
3,053,019	-				-0.3
3,053,019	-				+0.2
3,053,019	-				+2.3
3,053,019	-				-1.0
3,053,023	-				+0.8
3,053,039	-				+1.4
3,053,130	-				-2.6