Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS15995

Experiment: plant=Melon; plant sample=M2; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M2; plant location=P2
3,020,521	+				+0.9
3,020,525	+				-0.2
3,020,526	-				+1.7
3,020,603	-		LU632_RS15990	0.12	+0.8
3,020,672	+		LU632_RS15990	0.30	+0.5
3,020,672	+		LU632_RS15990	0.30	+0.2
3,020,672	+		LU632_RS15990	0.30	+2.7
3,020,673	-		LU632_RS15990	0.30	-1.3
3,020,676	+		LU632_RS15990	0.31	+1.7
3,020,676	+		LU632_RS15990	0.31	+0.1
3,020,677	-		LU632_RS15990	0.31	-0.9
3,020,677	-		LU632_RS15990	0.31	-1.7
3,021,025	+				-0.6
3,021,026	-				-0.4
3,021,041	-				+2.3
3,021,099	+				-0.7
3,021,100	-				-1.0
3,021,193	+				-0.9
3,021,194	-				+2.7
3,021,198	+				-1.2
3,021,199	-				-0.3
3,021,364	+				+0.7
3,021,364	+				-1.1
3,021,364	+				+4.9
3,021,364	+				-0.3
3,021,364	+				+0.4
3,021,364	+				-0.2
3,021,364	+				-0.1
3,021,365	-				+1.0
3,021,365	-				-0.8
3,021,365	-				+0.3
3,021,365	-				-0.2
3,021,365	-				-2.3
3,021,452	-				-0.3
3,021,568	+		LU632_RS15995	0.11	+0.2
3,021,568	+		LU632_RS15995	0.11	-0.3
3,021,569	-		LU632_RS15995	0.11	+0.3
3,021,569	-		LU632_RS15995	0.11	-0.6
3,021,570	+		LU632_RS15995	0.11	-0.4
3,021,571	-		LU632_RS15995	0.11	-1.0
3,021,620	+		LU632_RS15995	0.14	+0.7
3,021,620	+		LU632_RS15995	0.14	-1.4
3,021,646	+		LU632_RS15995	0.15	-0.9
3,021,647	-		LU632_RS15995	0.15	+0.3
3,021,682	+		LU632_RS15995	0.17	+0.8
3,021,737	-		LU632_RS15995	0.20	+0.7
3,021,737	-		LU632_RS15995	0.20	+0.5
3,021,848	+		LU632_RS15995	0.26	+0.1
3,021,849	-		LU632_RS15995	0.26	+0.7
3,021,875	-		LU632_RS15995	0.27	+1.9
3,021,877	+		LU632_RS15995	0.27	+1.4
3,021,884	+		LU632_RS15995	0.28	-0.5
3,021,885	-		LU632_RS15995	0.28	+1.0
3,021,885	-		LU632_RS15995	0.28	-1.1
3,021,885	-		LU632_RS15995	0.28	-0.7
3,021,885	-		LU632_RS15995	0.28	-1.5
3,022,006	-		LU632_RS15995	0.34	-0.1
3,022,013	-		LU632_RS15995	0.35	-0.3
3,022,030	+		LU632_RS15995	0.36	+0.4
3,022,051	-		LU632_RS15995	0.37	-0.3
3,022,059	+		LU632_RS15995	0.37	-0.5
3,022,059	+		LU632_RS15995	0.37	-0.7
3,022,059	+		LU632_RS15995	0.37	+0.8
3,022,059	+		LU632_RS15995	0.37	+0.6
3,022,060	-		LU632_RS15995	0.37	-1.3
3,022,064	+		LU632_RS15995	0.37	+0.1
3,022,064	+		LU632_RS15995	0.37	+0.4
3,022,066	+		LU632_RS15995	0.37	+1.2
3,022,066	+		LU632_RS15995	0.37	-0.1
3,022,066	+		LU632_RS15995	0.37	-0.6
3,022,066	+		LU632_RS15995	0.37	+0.8
3,022,066	+		LU632_RS15995	0.37	-0.8
3,022,066	+		LU632_RS15995	0.37	+0.8
3,022,067	-		LU632_RS15995	0.38	-0.8
3,022,067	-		LU632_RS15995	0.38	-0.0
3,022,067	-		LU632_RS15995	0.38	-0.3
3,022,111	+		LU632_RS15995	0.40	+0.2
3,022,112	-		LU632_RS15995	0.40	-1.2
3,022,112	-		LU632_RS15995	0.40	+0.1
3,022,129	+		LU632_RS15995	0.41	-0.6
3,022,237	+		LU632_RS15995	0.47	-0.6
3,022,237	+		LU632_RS15995	0.47	+0.9
3,022,237	+		LU632_RS15995	0.47	+1.0
3,022,237	+		LU632_RS15995	0.47	+1.4
3,022,238	-		LU632_RS15995	0.47	-1.4
3,022,238	-		LU632_RS15995	0.47	+1.7
3,022,238	-		LU632_RS15995	0.47	+0.3
3,022,238	-		LU632_RS15995	0.47	+1.5
3,022,239	+		LU632_RS15995	0.47	-1.5
3,022,246	+		LU632_RS15995	0.47	-0.3
3,022,247	-		LU632_RS15995	0.47	+1.4
3,022,251	-		LU632_RS15995	0.47	+0.1
3,022,368	+		LU632_RS15995	0.54	-0.9
3,022,371	+		LU632_RS15995	0.54	+1.0
3,022,457	+		LU632_RS15995	0.58	+0.6
3,022,458	-		LU632_RS15995	0.58	-2.2
3,022,490	-		LU632_RS15995	0.60	+1.4
3,022,490	-		LU632_RS15995	0.60	+0.2
3,022,494	-		LU632_RS15995	0.60	+0.9
3,022,508	-		LU632_RS15995	0.61	+1.0
3,022,565	-		LU632_RS15995	0.64	+1.5
3,022,576	+		LU632_RS15995	0.65	-0.4
3,022,633	+		LU632_RS15995	0.68	-0.1
3,022,633	+		LU632_RS15995	0.68	-0.7
3,022,633	+		LU632_RS15995	0.68	-0.5
3,022,678	-		LU632_RS15995	0.70	-1.9
3,022,681	+		LU632_RS15995	0.70	-1.5
3,022,789	+		LU632_RS15995	0.76	+1.2
3,022,789	+		LU632_RS15995	0.76	-0.4
3,022,789	+		LU632_RS15995	0.76	+0.5
3,022,913	-		LU632_RS15995	0.83	-0.3
3,022,967	+		LU632_RS15995	0.86	-0.3
3,022,967	+		LU632_RS15995	0.86	-0.2
3,022,968	-		LU632_RS15995	0.86	+0.1
3,022,983	+		LU632_RS15995	0.86	-0.3
3,023,320	-				-0.9
3,023,366	+				-0.8
3,023,384	-				-1.8
3,023,419	+				+1.6
3,023,485	+				-0.7
3,023,485	+				-0.1
3,023,486	-				+0.7
3,023,525	+				+0.1
3,023,567	-				-0.5