Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS15580

Experiment: plant=Melon; plant sample=M2; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M2; plant location=P2
2,952,885	-		LU632_RS15575	0.15	-0.5
2,952,901	-		LU632_RS15575	0.17	-0.7
2,952,945	+		LU632_RS15575	0.21	-0.4
2,952,946	-		LU632_RS15575	0.21	+1.5
2,952,946	-		LU632_RS15575	0.21	+1.9
2,953,035	+		LU632_RS15575	0.30	-0.9
2,953,164	+		LU632_RS15575	0.43	-0.2
2,953,165	-		LU632_RS15575	0.43	+0.9
2,953,165	-		LU632_RS15575	0.43	+1.1
2,953,167	-		LU632_RS15575	0.43	+0.2
2,953,167	-		LU632_RS15575	0.43	-1.3
2,953,175	+		LU632_RS15575	0.44	+0.9
2,953,228	-		LU632_RS15575	0.49	+0.2
2,953,228	-		LU632_RS15575	0.49	+0.5
2,953,228	-		LU632_RS15575	0.49	-1.2
2,953,228	-		LU632_RS15575	0.49	-2.9
2,953,353	+		LU632_RS15575	0.62	+0.2
2,953,353	+		LU632_RS15575	0.62	-0.2
2,953,353	+		LU632_RS15575	0.62	-0.7
2,953,353	+		LU632_RS15575	0.62	-3.3
2,953,354	-		LU632_RS15575	0.62	-0.5
2,953,439	+		LU632_RS15575	0.70	+2.3
2,953,555	-		LU632_RS15575	0.82	+0.1
2,953,603	+		LU632_RS15575	0.87	+0.1
2,953,604	-		LU632_RS15575	0.87	+0.6
2,953,604	-		LU632_RS15575	0.87	+1.9
2,953,822	+				+1.3
2,953,823	-		LU632_RS15580	0.10	+0.2
2,953,886	+		LU632_RS15580	0.34	-0.4
2,953,886	+		LU632_RS15580	0.34	+0.3
2,953,886	+		LU632_RS15580	0.34	+2.3
2,953,887	-		LU632_RS15580	0.34	+2.4
2,953,897	+		LU632_RS15580	0.38	-0.5
2,953,996	-		LU632_RS15580	0.75	-0.9
2,954,035	-		LU632_RS15580	0.90	-0.4
2,954,044	-				-2.6
2,954,101	-				+1.5
2,954,183	-		LU632_RS15585	0.22	+4.2
2,954,314	+		LU632_RS15585	0.57	-0.4
2,954,341	+		LU632_RS15585	0.64	+1.2
2,954,342	-		LU632_RS15585	0.64	-1.0
2,954,372	+		LU632_RS15585	0.72	+0.4
2,954,372	+		LU632_RS15585	0.72	-0.2
2,954,392	+		LU632_RS15585	0.78	-0.5
2,954,421	+		LU632_RS15585	0.85	+0.8
2,954,422	-		LU632_RS15585	0.85	+0.3
2,954,422	-		LU632_RS15585	0.85	+0.8
2,954,522	-				-1.7