Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS15385

Experiment: plant=Melon; plant sample=M2; plant location=P2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrecO and era are separated by 4 nucleotidesera and rnc overlap by 4 nucleotidesrnc and lepB are separated by 129 nucleotides LU632_RS15375: recO - DNA repair protein RecO, at 2,910,816 to 2,911,550 recO LU632_RS15380: era - GTPase Era, at 2,911,555 to 2,912,460 era LU632_RS15385: rnc - ribonuclease III, at 2,912,457 to 2,913,137 rnc LU632_RS15390: lepB - signal peptidase I, at 2,913,267 to 2,914,229 lepB Position (kb) 2912 2913 2914Strain fitness (log2 ratio) -1 0 1at 2911.568 kb on - strandat 2912.569 kb on - strand, within rncat 2912.569 kb on - strand, within rncat 2912.618 kb on - strand, within rncat 2912.651 kb on - strand, within rncat 2912.969 kb on - strand, within rncat 2912.990 kb on - strand, within rncat 2913.124 kb on - strandat 2913.161 kb on - strandat 2913.243 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction plant=Melon; plant sample=M2; plant location=P2
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2,911,568 - -0.3
2,912,569 - rnc LU632_RS15385 0.16 +0.6
2,912,569 - rnc LU632_RS15385 0.16 +0.0
2,912,618 - rnc LU632_RS15385 0.24 -0.4
2,912,651 - rnc LU632_RS15385 0.28 -0.4
2,912,969 - rnc LU632_RS15385 0.75 -1.1
2,912,990 - rnc LU632_RS15385 0.78 +0.0
2,913,124 - +1.6
2,913,161 - -0.7
2,913,243 - +0.4

Or see this region's nucleotide sequence