Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS14650

Experiment: plant=Melon; plant sample=M2; plant location=P2

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntlolE and lolD overlap by 1 nucleotideslolD and lolC overlap by 8 nucleotides LU632_RS14645: lolE - lipoprotein-releasing ABC transporter permease subunit LolE, at 2,785,317 to 2,786,561 lolE LU632_RS14650: lolD - lipoprotein-releasing ABC transporter ATP-binding protein LolD, at 2,786,561 to 2,787,265 lolD LU632_RS14655: lolC - lipoprotein-releasing ABC transporter permease subunit LolC, at 2,787,258 to 2,788,457 lolC Position (kb) 2786 2787 2788Strain fitness (log2 ratio) -1 0 1at 2787.266 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction plant=Melon; plant sample=M2; plant location=P2
remove
2,787,266 - -1.4

Or see this region's nucleotide sequence