Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS14620

Experiment: plant=Melon; plant sample=M2; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M2; plant location=P2
2,780,032	+		LU632_RS14615	0.30	-0.2
2,780,074	-		LU632_RS14615	0.34	+0.8
2,780,074	-		LU632_RS14615	0.34	-0.7
2,780,074	-		LU632_RS14615	0.34	+0.3
2,780,103	+		LU632_RS14615	0.37	+0.4
2,780,159	+		LU632_RS14615	0.43	-1.1
2,780,159	+		LU632_RS14615	0.43	-0.6
2,780,160	-		LU632_RS14615	0.43	-1.4
2,780,161	+		LU632_RS14615	0.43	-0.2
2,780,161	+		LU632_RS14615	0.43	-1.6
2,780,161	+		LU632_RS14615	0.43	-1.6
2,780,161	+		LU632_RS14615	0.43	+0.0
2,780,161	+		LU632_RS14615	0.43	-1.8
2,780,162	-		LU632_RS14615	0.43	-1.6
2,780,162	-		LU632_RS14615	0.43	-0.6
2,780,163	+		LU632_RS14615	0.43	+0.8
2,780,163	+		LU632_RS14615	0.43	-0.0
2,780,164	-		LU632_RS14615	0.43	-0.6
2,780,164	-		LU632_RS14615	0.43	-2.4
2,780,164	-		LU632_RS14615	0.43	+0.0
2,780,164	-		LU632_RS14615	0.43	+0.2
2,780,267	+		LU632_RS14615	0.54	+0.4
2,780,324	-		LU632_RS14615	0.59	-1.1
2,780,341	+		LU632_RS14615	0.61	-0.8
2,780,341	+		LU632_RS14615	0.61	-2.2
2,780,369	-		LU632_RS14615	0.64	+1.7
2,780,369	-		LU632_RS14615	0.64	-0.5
2,780,411	+		LU632_RS14615	0.68	-2.0
2,780,411	+		LU632_RS14615	0.68	-1.0
2,780,411	+		LU632_RS14615	0.68	-1.0
2,780,412	-		LU632_RS14615	0.68	-0.3
2,780,412	-		LU632_RS14615	0.68	+2.2
2,780,494	-		LU632_RS14615	0.76	+0.9
2,780,533	+		LU632_RS14615	0.80	-0.4
2,780,587	+		LU632_RS14615	0.85	-0.4
2,780,664	+				-1.8
2,780,695	-				+1.9
2,780,727	-				-2.1
2,780,735	-				+0.1
2,780,753	-				+0.6
2,780,790	+				-0.8
2,780,804	-				-0.4
2,780,871	-				-0.8
2,780,871	-				-1.2
2,780,882	+				+0.2
2,780,901	+				+1.7
2,780,901	+				-0.7
2,780,924	+				+0.2
2,780,927	-				+0.2
2,780,953	+				+0.0
2,780,953	+				+0.2
2,780,994	-				-0.6
2,780,996	-				+0.1
2,781,048	-		LU632_RS14620	0.13	+0.4
2,781,213	-		LU632_RS14620	0.31	+0.8
2,781,282	-		LU632_RS14620	0.39	+1.0
2,781,298	-		LU632_RS14620	0.40	-0.8
2,781,347	+		LU632_RS14620	0.46	-0.2
2,781,352	-		LU632_RS14620	0.46	+0.2
2,781,352	-		LU632_RS14620	0.46	+0.2
2,781,359	+		LU632_RS14620	0.47	+0.9
2,781,565	-		LU632_RS14620	0.69	+0.5
2,781,578	+		LU632_RS14620	0.71	+0.3
2,781,596	+		LU632_RS14620	0.73	+0.9
2,781,721	-		LU632_RS14620	0.86	+0.3
2,781,777	+				+1.2
2,781,777	+				-0.4
2,781,777	+				-0.8
2,781,777	+				-0.2
2,781,777	+				-0.8
2,781,777	+				-0.7
2,781,778	-				+1.6
2,781,778	-				+0.9
2,781,778	-				-0.7
2,781,779	+				-0.8
2,781,814	+				-1.8
2,781,837	-				+1.6
2,781,908	+				-1.0
2,781,923	-		LU632_RS14625	0.10	-0.3
2,782,197	+		LU632_RS14625	0.44	+1.7
2,782,198	-		LU632_RS14625	0.44	-1.0
2,782,391	-		LU632_RS14625	0.68	-0.2
2,782,405	+		LU632_RS14625	0.70	-0.2
2,782,446	+		LU632_RS14625	0.75	-0.1
2,782,446	+		LU632_RS14625	0.75	-1.4
2,782,446	+		LU632_RS14625	0.75	+0.4
2,782,493	+		LU632_RS14625	0.80	-0.4
2,782,493	+		LU632_RS14625	0.80	-0.5
2,782,494	-		LU632_RS14625	0.80	+0.3
2,782,582	+				-0.0
2,782,583	-				+10.5
2,782,588	-				-0.7
2,782,684	-				-0.4
2,782,689	+				+0.3
2,782,689	+				-1.6
2,782,689	+				-0.0
2,782,689	+				+0.6
2,782,689	+				-2.5
2,782,690	-				+0.3
2,782,690	-				-0.0
2,782,690	-				-0.1
2,782,690	-				-0.6
2,782,690	-				+0.2
2,782,692	-				-0.0
2,782,696	+				+0.7
2,782,762	+		LU632_RS14630	0.12	+0.4