Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS14440

Experiment: plant=Melon; plant sample=M2; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M2; plant location=P2
2,750,848	-		LU632_RS14430	0.61	+1.2
2,751,021	+		LU632_RS14430	0.78	+2.3
2,751,021	+		LU632_RS14430	0.78	-0.3
2,751,022	-		LU632_RS14430	0.78	+1.2
2,751,022	-		LU632_RS14430	0.78	+3.7
2,751,175	+				-2.2
2,751,195	+				-1.6
2,751,196	-				+0.1
2,751,196	-				+0.1
2,751,253	-				+1.2
2,751,333	+				-0.2
2,751,333	+				-0.2
2,751,333	+				+2.0
2,751,334	-				-0.4
2,751,334	-				-1.6
2,751,406	-				-0.7
2,751,420	+				+0.1
2,751,421	-				-0.8
2,751,459	-		LU632_RS14435	0.29	-1.3
2,751,499	-		LU632_RS14435	0.49	+0.4
2,751,499	-		LU632_RS14435	0.49	+0.3
2,751,499	-		LU632_RS14435	0.49	+0.7
2,751,502	+		LU632_RS14435	0.51	+0.1
2,751,502	+		LU632_RS14435	0.51	+0.4
2,751,503	-		LU632_RS14435	0.52	+1.6
2,751,535	+		LU632_RS14435	0.68	-2.3
2,751,535	+		LU632_RS14435	0.68	+0.8
2,751,536	-		LU632_RS14435	0.69	+0.3
2,751,624	+				-0.5
2,751,630	+				+0.3
2,751,630	+				-0.8
2,751,631	-				+0.7
2,751,631	-				+0.1
2,751,631	-				-0.2
2,751,771	-				+0.6
2,751,886	+		LU632_RS14440	0.13	-1.6
2,751,942	-		LU632_RS14440	0.21	-0.4
2,751,969	+		LU632_RS14440	0.25	+1.0
2,751,970	-		LU632_RS14440	0.25	+0.9
2,751,977	-		LU632_RS14440	0.26	-1.6
2,751,977	-		LU632_RS14440	0.26	-0.4
2,752,073	+		LU632_RS14440	0.40	+1.1
2,752,074	-		LU632_RS14440	0.40	-0.7
2,752,149	+		LU632_RS14440	0.51	+1.0
2,752,194	-		LU632_RS14440	0.57	-1.2
2,752,215	+		LU632_RS14440	0.60	+2.6
2,752,216	-		LU632_RS14440	0.61	+0.2
2,752,216	-		LU632_RS14440	0.61	+1.3
2,752,278	+		LU632_RS14440	0.70	-1.0
2,752,278	+		LU632_RS14440	0.70	+0.0
2,752,451	+				-3.0
2,752,512	+				+1.1
2,752,512	+				-0.4
2,752,523	+				-0.1
2,752,523	+				+0.9
2,752,524	-				+0.2
2,752,755	-		LU632_RS14445	0.23	-0.9
2,752,767	+		LU632_RS14445	0.24	-0.3
2,752,767	+		LU632_RS14445	0.24	+0.8
2,752,767	+		LU632_RS14445	0.24	+0.7
2,752,768	-		LU632_RS14445	0.24	-1.9
2,752,768	-		LU632_RS14445	0.24	+0.6
2,752,768	-		LU632_RS14445	0.24	-0.2
2,752,796	-		LU632_RS14445	0.27	-0.0
2,753,004	+		LU632_RS14445	0.46	+0.5
2,753,064	+		LU632_RS14445	0.52	-2.0
2,753,064	+		LU632_RS14445	0.52	-0.5
2,753,171	+		LU632_RS14445	0.62	+0.7
2,753,183	+		LU632_RS14445	0.63	-0.1
2,753,184	-		LU632_RS14445	0.63	+1.4
2,753,184	-		LU632_RS14445	0.63	+0.4
2,753,281	-		LU632_RS14445	0.72	+0.2
2,753,281	-		LU632_RS14445	0.72	-0.8