Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS14170

Experiment: plant=Melon; plant sample=M2; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M2; plant location=P2
2,715,078	+		LU632_RS14165	0.42	-0.4
2,715,078	+		LU632_RS14165	0.42	+0.8
2,716,394	-		LU632_RS14170	0.19	+0.2
2,716,436	-		LU632_RS14170	0.21	-1.0
2,716,439	-		LU632_RS14170	0.21	+1.4
2,717,079	-		LU632_RS14170	0.53	+0.6
2,717,127	+		LU632_RS14170	0.55	-0.4
2,717,212	+		LU632_RS14170	0.59	-2.5
2,717,585	+		LU632_RS14170	0.78	-0.6
2,717,621	-		LU632_RS14170	0.80	-0.4
2,717,681	+		LU632_RS14170	0.83	-1.9
2,717,686	-		LU632_RS14170	0.83	-1.4
2,717,740	+		LU632_RS14170	0.86	-0.9
2,717,921	-				-0.7
2,718,065	+				-0.3
2,718,333	-		LU632_RS14175	0.10	+0.2
2,718,339	-		LU632_RS14175	0.10	+0.4
2,718,383	-		LU632_RS14175	0.12	-0.7
2,718,470	+		LU632_RS14175	0.15	-0.2
2,718,491	+		LU632_RS14175	0.15	+1.3
2,718,494	+		LU632_RS14175	0.16	+1.0
2,718,494	+		LU632_RS14175	0.16	+0.5
2,718,495	-		LU632_RS14175	0.16	-0.4
2,718,500	+		LU632_RS14175	0.16	-2.6
2,718,683	-		LU632_RS14175	0.22	-0.2
2,718,685	+		LU632_RS14175	0.22	+0.6
2,718,751	+		LU632_RS14175	0.24	-1.5
2,718,751	+		LU632_RS14175	0.24	-2.9
2,718,751	+		LU632_RS14175	0.24	-1.1
2,718,752	-		LU632_RS14175	0.24	-1.2
2,718,756	-		LU632_RS14175	0.24	+0.1
2,718,756	-		LU632_RS14175	0.24	-0.8
2,718,756	-		LU632_RS14175	0.24	+0.6
2,718,771	+		LU632_RS14175	0.25	-0.7
2,718,805	+		LU632_RS14175	0.26	+3.6
2,718,805	+		LU632_RS14175	0.26	-0.4
2,718,806	-		LU632_RS14175	0.26	+1.0
2,718,806	-		LU632_RS14175	0.26	-0.4
2,718,837	-		LU632_RS14175	0.27	+0.6
2,718,970	-		LU632_RS14175	0.32	-0.1
2,719,012	-		LU632_RS14175	0.33	-0.3
2,719,012	-		LU632_RS14175	0.33	-0.2
2,719,012	-		LU632_RS14175	0.33	-0.2
2,719,013	+		LU632_RS14175	0.33	-0.4
2,719,014	-		LU632_RS14175	0.33	-2.3