Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS13970

Experiment: plant=Melon; plant sample=M2; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M2; plant location=P2
2,678,629	+				-1.0
2,678,630	-				+0.5
2,678,712	+				-0.3
2,678,742	-				-1.7
2,678,843	-				-0.5
2,679,439	-				-1.3
2,679,508	+				-1.1
2,679,509	-				+0.4
2,679,556	-				-0.6
2,679,594	-				+2.2
2,679,751	+		LU632_RS13970	0.16	-0.5
2,679,752	-		LU632_RS13970	0.16	-0.7
2,679,755	-		LU632_RS13970	0.16	-0.4
2,679,829	+		LU632_RS13970	0.21	+0.5
2,679,879	+		LU632_RS13970	0.25	-1.7
2,679,971	-		LU632_RS13970	0.31	-0.1
2,679,995	-		LU632_RS13970	0.33	-1.1
2,679,995	-		LU632_RS13970	0.33	-2.1
2,679,998	+		LU632_RS13970	0.33	-0.7
2,680,012	+		LU632_RS13970	0.34	+0.9
2,680,028	+		LU632_RS13970	0.35	-0.1
2,680,028	+		LU632_RS13970	0.35	+3.7
2,680,073	+		LU632_RS13970	0.38	-0.8
2,680,074	-		LU632_RS13970	0.38	-2.3
2,680,285	-		LU632_RS13970	0.53	+1.7
2,680,577	-		LU632_RS13970	0.73	-1.8
2,680,611	+		LU632_RS13970	0.76	-0.9
2,680,651	-		LU632_RS13970	0.78	-0.1
2,680,673	+		LU632_RS13970	0.80	+0.2
2,680,754	-		LU632_RS13970	0.86	+0.2
2,680,754	-		LU632_RS13970	0.86	-0.1
2,680,756	+		LU632_RS13970	0.86	-3.5
2,680,756	+		LU632_RS13970	0.86	-1.7
2,680,757	-		LU632_RS13970	0.86	+0.2
2,680,757	-		LU632_RS13970	0.86	-1.1
2,680,811	-		LU632_RS13970	0.90	+3.3
2,680,841	+				+0.6
2,680,841	+				+0.5
2,680,841	+				+1.4
2,680,841	+				-0.4
2,680,841	+				+0.4
2,680,841	+				+0.5
2,680,842	-				-1.7
2,680,842	-				-0.4
2,680,842	-				-0.1
2,680,842	-				+1.1
2,680,842	-				-0.5
2,680,842	-				-1.0
2,680,842	-				+1.9
2,680,842	-				+1.0
2,680,875	-				+2.7
2,681,001	-				-0.6
2,681,004	+				+1.1
2,681,005	-				+0.8
2,681,005	-				-1.0
2,681,233	+		LU632_RS13975	0.20	+1.0
2,681,234	-		LU632_RS13975	0.20	+0.3
2,681,265	+		LU632_RS13975	0.23	-1.1
2,681,270	+		LU632_RS13975	0.23	+1.5
2,681,322	+		LU632_RS13975	0.27	+0.2
2,681,323	-		LU632_RS13975	0.27	+0.3
2,681,336	+		LU632_RS13975	0.29	-0.5
2,681,336	+		LU632_RS13975	0.29	-1.1
2,681,337	-		LU632_RS13975	0.29	-0.0
2,681,337	-		LU632_RS13975	0.29	-1.7
2,681,459	-		LU632_RS13975	0.39	-0.8
2,681,477	-		LU632_RS13975	0.41	-0.3
2,681,511	-		LU632_RS13975	0.43	-1.2
2,681,551	-		LU632_RS13975	0.47	+0.9
2,681,551	-		LU632_RS13975	0.47	+0.0
2,681,621	+		LU632_RS13975	0.53	-0.5
2,681,621	+		LU632_RS13975	0.53	+0.5
2,681,622	-		LU632_RS13975	0.53	-1.5
2,681,622	-		LU632_RS13975	0.53	-2.5
2,681,632	+		LU632_RS13975	0.54	-1.2
2,681,633	-		LU632_RS13975	0.54	-1.9
2,681,706	-		LU632_RS13975	0.60	+0.3
2,681,840	-		LU632_RS13975	0.71	-0.3
2,681,843	+		LU632_RS13975	0.72	-1.8
2,681,844	-		LU632_RS13975	0.72	-0.2
2,681,855	-		LU632_RS13975	0.73	+0.0
2,681,905	-		LU632_RS13975	0.77	+1.3
2,681,909	+		LU632_RS13975	0.77	-0.0