Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS13810

Experiment: plant=Melon; plant sample=M2; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M2; plant location=P2
2,647,266	+	rfbG	LU632_RS13805	0.14	+0.2
2,647,309	+	rfbG	LU632_RS13805	0.18	+0.4
2,647,310	-	rfbG	LU632_RS13805	0.18	-0.3
2,647,407	+	rfbG	LU632_RS13805	0.27	+0.8
2,647,488	-	rfbG	LU632_RS13805	0.34	-0.3
2,647,491	-	rfbG	LU632_RS13805	0.35	-0.7
2,647,738	-	rfbG	LU632_RS13805	0.57	-1.8
2,647,770	-	rfbG	LU632_RS13805	0.60	-2.2
2,647,857	+	rfbG	LU632_RS13805	0.68	-0.1
2,647,857	+	rfbG	LU632_RS13805	0.68	-1.3
2,647,857	+	rfbG	LU632_RS13805	0.68	+0.2
2,647,910	+	rfbG	LU632_RS13805	0.73	-1.1
2,647,917	-	rfbG	LU632_RS13805	0.73	+0.1
2,648,013	-	rfbG	LU632_RS13805	0.82	-0.3
2,648,025	-	rfbG	LU632_RS13805	0.83	+0.9
2,648,093	+	rfbG	LU632_RS13805	0.90	-0.1
2,648,166	+				+0.4
2,648,200	+				+0.2
2,648,200	+				+0.2
2,648,200	+				-0.5
2,648,201	-				+0.2
2,648,201	-				-0.8
2,648,201	-				-0.1
2,648,385	+	rfbC	LU632_RS13810	0.33	+0.1
2,648,385	+	rfbC	LU632_RS13810	0.33	-0.2
2,648,386	-	rfbC	LU632_RS13810	0.34	-0.8
2,648,386	-	rfbC	LU632_RS13810	0.34	+2.9
2,648,389	+	rfbC	LU632_RS13810	0.34	-0.9
2,648,390	-	rfbC	LU632_RS13810	0.34	+0.1
2,648,486	+	rfbC	LU632_RS13810	0.52	+0.8
2,648,538	-	rfbC	LU632_RS13810	0.62	-0.1
2,648,723	+				+0.3
2,648,724	-				+1.4
2,648,724	-				-1.1
2,648,724	-				-1.1
2,648,757	+				-0.5
2,648,884	-		LU632_RS13815	0.16	-0.5
2,648,884	-		LU632_RS13815	0.16	+0.6
2,648,897	+		LU632_RS13815	0.17	+0.0
2,648,919	+		LU632_RS13815	0.20	+1.1
2,648,955	-		LU632_RS13815	0.24	+1.3
2,648,983	-		LU632_RS13815	0.27	+0.4
2,649,112	-		LU632_RS13815	0.43	+2.2
2,649,112	-		LU632_RS13815	0.43	+1.5
2,649,298	-		LU632_RS13815	0.64	+0.7
2,649,308	+		LU632_RS13815	0.65	-0.5
2,649,308	+		LU632_RS13815	0.65	+0.0
2,649,308	+		LU632_RS13815	0.65	-1.7
2,649,309	-		LU632_RS13815	0.66	+2.2
2,649,309	-		LU632_RS13815	0.66	-1.4
2,649,309	-		LU632_RS13815	0.66	-1.5
2,649,309	-		LU632_RS13815	0.66	-0.9
2,649,431	+		LU632_RS13815	0.80	+0.2
2,649,432	-		LU632_RS13815	0.80	-1.1
2,649,448	+		LU632_RS13815	0.82	+0.4
2,649,449	-		LU632_RS13815	0.82	-0.1
2,649,449	-		LU632_RS13815	0.82	-1.4
2,649,582	-				-0.1
2,649,600	+				-1.7
2,649,723	+				-1.9
2,649,724	-				-0.2
2,649,725	+				+0.1
2,649,726	-				+1.0
2,649,726	-				+0.1
2,649,726	-				-0.1