Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS13690

Experiment: plant=Melon; plant sample=M2; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M2; plant location=P2
2,611,938	-		LU632_RS13685	0.43	+0.9
2,612,026	+		LU632_RS13685	0.52	-1.1
2,612,027	-		LU632_RS13685	0.53	-0.8
2,612,065	+		LU632_RS13685	0.57	+0.5
2,612,065	+		LU632_RS13685	0.57	+1.1
2,612,066	-		LU632_RS13685	0.57	-0.7
2,612,089	-		LU632_RS13685	0.59	+0.2
2,612,135	+		LU632_RS13685	0.64	+0.3
2,612,136	-		LU632_RS13685	0.64	+0.1
2,612,163	+		LU632_RS13685	0.67	+0.1
2,612,203	+		LU632_RS13685	0.71	+0.5
2,612,204	-		LU632_RS13685	0.71	-0.4
2,612,206	-		LU632_RS13685	0.72	+0.8
2,612,340	+		LU632_RS13685	0.86	+1.2
2,612,341	-		LU632_RS13685	0.86	-1.2
2,612,388	+				+1.5
2,612,389	-				+1.3
2,612,469	+				-3.2
2,612,469	+				+0.4
2,612,472	+				+1.0
2,612,482	+				-0.5
2,612,486	+				-0.8
2,612,615	-				-1.1
2,612,745	+				-0.1
2,612,844	+				+0.5
2,612,844	+				-1.9
2,612,987	-				+1.0
2,613,118	+		LU632_RS13690	0.25	-1.3
2,613,118	+		LU632_RS13690	0.25	+1.4
2,613,119	-		LU632_RS13690	0.25	+0.6
2,613,141	+		LU632_RS13690	0.28	+0.3
2,613,142	-		LU632_RS13690	0.28	-0.7
2,613,143	+		LU632_RS13690	0.28	+0.1
2,613,144	-		LU632_RS13690	0.28	-0.1
2,613,313	-		LU632_RS13690	0.51	-0.7
2,613,349	-		LU632_RS13690	0.55	+1.9
2,613,349	-		LU632_RS13690	0.55	+1.3
2,613,399	+		LU632_RS13690	0.62	-1.3
2,613,400	-		LU632_RS13690	0.62	+0.2
2,613,440	+		LU632_RS13690	0.68	-0.1
2,613,442	+		LU632_RS13690	0.68	+1.5
2,613,443	-		LU632_RS13690	0.68	+1.1
2,613,515	-		LU632_RS13690	0.78	-1.7
2,613,576	-		LU632_RS13690	0.86	+0.7
2,613,576	-		LU632_RS13690	0.86	+1.8
2,613,576	-		LU632_RS13690	0.86	+1.5
2,613,578	-		LU632_RS13690	0.86	+0.4
2,613,608	+				+0.2
2,613,622	+				+0.5
2,613,623	-				-1.1
2,613,698	-				+0.3
2,613,762	+				-0.8
2,613,763	-				-0.7
2,613,763	-				+0.8
2,613,795	-				-2.3
2,613,801	-				-0.3
2,613,819	-				-1.3
2,613,843	-				+0.0
2,613,937	+		LU632_RS13695	0.13	+3.5
2,613,938	-		LU632_RS13695	0.14	-2.5
2,613,950	+		LU632_RS13695	0.16	-1.0
2,613,950	+		LU632_RS13695	0.16	-0.1
2,613,951	-		LU632_RS13695	0.17	-0.6
2,613,951	-		LU632_RS13695	0.17	-0.1
2,613,951	-		LU632_RS13695	0.17	+0.9
2,613,954	+		LU632_RS13695	0.17	-0.3
2,613,954	+		LU632_RS13695	0.17	+0.3
2,613,955	-		LU632_RS13695	0.17	-1.2
2,613,955	-		LU632_RS13695	0.17	+0.4
2,613,975	-		LU632_RS13695	0.22	-0.0
2,614,079	-		LU632_RS13695	0.45	-0.7
2,614,106	+		LU632_RS13695	0.51	+1.5
2,614,106	+		LU632_RS13695	0.51	+0.8
2,614,106	+		LU632_RS13695	0.51	+0.7
2,614,106	+		LU632_RS13695	0.51	-0.2
2,614,107	-		LU632_RS13695	0.51	-0.6
2,614,107	-		LU632_RS13695	0.51	-1.8
2,614,108	+		LU632_RS13695	0.52	+0.9
2,614,108	+		LU632_RS13695	0.52	-1.4
2,614,121	-		LU632_RS13695	0.55	+0.4
2,614,121	-		LU632_RS13695	0.55	+1.3
2,614,225	-		LU632_RS13695	0.78	+1.6
2,614,257	+		LU632_RS13695	0.85	+0.1
2,614,258	-		LU632_RS13695	0.85	+0.0
2,614,261	-		LU632_RS13695	0.86	-1.1