Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS13385

Experiment: plant=Melon; plant sample=M2; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M2; plant location=P2
2,552,291	+		LU632_RS13380	0.46	+0.2
2,552,327	+		LU632_RS13380	0.49	-0.4
2,552,490	+		LU632_RS13380	0.62	+0.2
2,552,490	+		LU632_RS13380	0.62	+0.6
2,552,491	-		LU632_RS13380	0.62	+0.1
2,552,608	+		LU632_RS13380	0.71	-1.6
2,552,658	+		LU632_RS13380	0.75	+0.2
2,552,658	+		LU632_RS13380	0.75	-1.0
2,552,780	-		LU632_RS13380	0.85	-2.4
2,552,793	-		LU632_RS13380	0.86	-0.5
2,553,008	-				-1.4
2,553,132	+				+2.0
2,554,248	-				+2.1
2,554,248	-				+1.4
2,554,276	+				-2.3
2,554,276	+				-0.1
2,554,314	+				-1.4
2,554,315	-				-0.4
2,554,380	+				+2.3
2,554,381	-				+0.2
2,554,409	-				+2.1
2,554,508	+				-0.1
2,554,509	-				-0.3
2,554,510	+				-0.5
2,554,510	+				+1.0
2,554,511	-				-0.3
2,554,511	-				-0.9
2,554,604	+				-0.7
2,554,609	-				+0.4
2,554,850	-				+0.4
2,554,953	-	mepM	LU632_RS13390	0.17	+0.1
2,554,966	+	mepM	LU632_RS13390	0.18	+0.9
2,554,974	+	mepM	LU632_RS13390	0.18	-1.5
2,554,975	-	mepM	LU632_RS13390	0.18	-0.7
2,554,975	-	mepM	LU632_RS13390	0.18	+1.9
2,554,975	-	mepM	LU632_RS13390	0.18	-1.1
2,554,984	+	mepM	LU632_RS13390	0.19	+0.3
2,554,985	-	mepM	LU632_RS13390	0.19	+1.2
2,554,987	-	mepM	LU632_RS13390	0.19	+0.5
2,554,987	-	mepM	LU632_RS13390	0.19	+0.2
2,554,987	-	mepM	LU632_RS13390	0.19	+0.4
2,555,013	+	mepM	LU632_RS13390	0.21	-0.3
2,555,013	+	mepM	LU632_RS13390	0.21	-1.0
2,555,013	+	mepM	LU632_RS13390	0.21	+1.1
2,555,013	+	mepM	LU632_RS13390	0.21	-0.4
2,555,013	+	mepM	LU632_RS13390	0.21	-0.3
2,555,014	-	mepM	LU632_RS13390	0.21	+0.6