Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS13340

Experiment: plant=Melon; plant sample=M2; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M2; plant location=P2
2,542,670	+		LU632_RS13325	0.65	+0.5
2,542,671	-		LU632_RS13325	0.66	-2.7
2,542,671	-		LU632_RS13325	0.66	+0.7
2,542,673	-		LU632_RS13325	0.66	-1.2
2,542,676	+		LU632_RS13325	0.66	+0.2
2,542,735	+		LU632_RS13325	0.75	-1.0
2,542,736	-		LU632_RS13325	0.76	-1.0
2,542,736	-		LU632_RS13325	0.76	-0.8
2,542,739	+		LU632_RS13325	0.76	+0.2
2,542,739	+		LU632_RS13325	0.76	+0.8
2,542,902	+				+0.8
2,542,930	+				-0.8
2,542,930	+				-0.5
2,542,931	-				+1.8
2,542,993	+				-0.6
2,542,994	-				+0.6
2,542,996	+				+5.2
2,542,997	-				-2.6
2,543,014	-				+0.1
2,543,015	+				-0.4
2,543,016	-				-0.0
2,543,016	-				+2.2
2,543,016	-				-1.1
2,543,016	-				-0.6
2,543,019	+				-0.6
2,543,020	-				+1.9
2,543,020	-				+1.4
2,543,173	+				-1.8
2,543,197	+				+0.4
2,543,291	-		LU632_RS13330	0.46	+0.6
2,543,347	-		LU632_RS13330	0.73	+0.8
2,543,472	+		LU632_RS13335	0.43	+1.0
2,543,472	+		LU632_RS13335	0.43	+0.3
2,543,473	-		LU632_RS13335	0.43	-0.8
2,543,571	+				-0.8
2,543,571	+				+0.9
2,543,572	-				+0.6
2,543,600	-				+0.1
2,543,600	-				-0.7
2,543,602	+				-1.9
2,543,611	+				+0.9
2,543,611	+				+1.2
2,543,611	+				+1.6
2,543,612	-				-0.3
2,543,669	+				-0.8
2,543,669	+				+1.4
2,543,760	-		LU632_RS13340	0.36	-0.0
2,543,788	+		LU632_RS13340	0.44	+1.6
2,543,789	-		LU632_RS13340	0.44	+0.2
2,544,201	+		LU632_RS13345	0.42	+0.1
2,544,202	-		LU632_RS13345	0.42	+2.0
2,544,251	+		LU632_RS13345	0.56	+1.2
2,544,251	+		LU632_RS13345	0.56	+1.1
2,544,329	+		LU632_RS13345	0.77	-1.2
2,544,393	-				-1.5
2,544,548	-				-0.1
2,544,550	+				+0.7
2,544,550	+				+1.4
2,544,550	+				+1.0
2,544,730	+	purT	LU632_RS13350	0.15	+0.6
2,544,730	+	purT	LU632_RS13350	0.15	+0.4
2,544,731	-	purT	LU632_RS13350	0.15	-2.9
2,544,731	-	purT	LU632_RS13350	0.15	+0.8
2,544,782	+	purT	LU632_RS13350	0.20	-0.8
2,544,783	-	purT	LU632_RS13350	0.20	+1.6
2,544,934	+	purT	LU632_RS13350	0.32	+0.9
2,544,944	+	purT	LU632_RS13350	0.33	+0.7
2,544,944	+	purT	LU632_RS13350	0.33	-0.6
2,544,945	-	purT	LU632_RS13350	0.33	+2.2