Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS13325

Experiment: plant=Melon; plant sample=M2; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M2; plant location=P2
2,541,306	+		LU632_RS13320	0.61	-0.7
2,541,353	+		LU632_RS13320	0.63	-0.4
2,541,353	+		LU632_RS13320	0.63	-0.8
2,541,354	-		LU632_RS13320	0.63	+1.4
2,541,393	+		LU632_RS13320	0.65	-1.9
2,541,393	+		LU632_RS13320	0.65	+1.6
2,541,423	+		LU632_RS13320	0.67	+0.8
2,541,423	+		LU632_RS13320	0.67	+2.3
2,541,424	-		LU632_RS13320	0.67	-0.0
2,541,425	+		LU632_RS13320	0.67	+0.2
2,541,438	-		LU632_RS13320	0.67	+1.6
2,541,461	+		LU632_RS13320	0.68	+1.0
2,541,461	+		LU632_RS13320	0.68	+0.7
2,541,461	+		LU632_RS13320	0.68	+0.0
2,541,463	+		LU632_RS13320	0.69	-0.6
2,541,463	+		LU632_RS13320	0.69	-0.4
2,541,464	-		LU632_RS13320	0.69	-0.0
2,541,470	-		LU632_RS13320	0.69	+0.4
2,541,470	-		LU632_RS13320	0.69	+0.6
2,541,470	-		LU632_RS13320	0.69	+1.1
2,541,512	+		LU632_RS13320	0.71	+1.1
2,541,513	-		LU632_RS13320	0.71	+0.2
2,541,548	+		LU632_RS13320	0.73	-0.1
2,541,548	+		LU632_RS13320	0.73	-2.4
2,541,548	+		LU632_RS13320	0.73	+0.6
2,541,549	-		LU632_RS13320	0.73	-1.0
2,541,549	-		LU632_RS13320	0.73	-1.0
2,541,549	-		LU632_RS13320	0.73	-1.8
2,541,552	-		LU632_RS13320	0.73	+0.6
2,541,671	+		LU632_RS13320	0.79	+1.6
2,541,672	-		LU632_RS13320	0.79	-0.1
2,541,672	-		LU632_RS13320	0.79	-0.5
2,541,691	-		LU632_RS13320	0.80	-0.8
2,541,691	-		LU632_RS13320	0.80	-0.1
2,541,731	+		LU632_RS13320	0.81	+0.8
2,541,732	-		LU632_RS13320	0.81	+0.9
2,541,798	+		LU632_RS13320	0.85	+1.0
2,541,818	+		LU632_RS13320	0.86	-0.2
2,541,819	-		LU632_RS13320	0.86	-0.0
2,541,827	+		LU632_RS13320	0.86	-0.5
2,542,041	-				-0.6
2,542,043	+				+1.2
2,542,044	-				+1.0
2,542,078	-				+0.1
2,542,148	+				-2.0
2,542,215	+				-0.1
2,542,216	-				+0.3
2,542,237	+				+1.0
2,542,339	+		LU632_RS13325	0.15	-0.5
2,542,353	-		LU632_RS13325	0.17	+0.7
2,542,391	-		LU632_RS13325	0.23	+5.0
2,542,547	+		LU632_RS13325	0.47	+0.5
2,542,547	+		LU632_RS13325	0.47	-0.4
2,542,547	+		LU632_RS13325	0.47	+1.9
2,542,548	-		LU632_RS13325	0.47	+0.1
2,542,670	+		LU632_RS13325	0.65	+0.5
2,542,671	-		LU632_RS13325	0.66	-2.7
2,542,671	-		LU632_RS13325	0.66	+0.7
2,542,673	-		LU632_RS13325	0.66	-1.2
2,542,676	+		LU632_RS13325	0.66	+0.2
2,542,735	+		LU632_RS13325	0.75	-1.0
2,542,736	-		LU632_RS13325	0.76	-1.0
2,542,736	-		LU632_RS13325	0.76	-0.8
2,542,739	+		LU632_RS13325	0.76	+0.2
2,542,739	+		LU632_RS13325	0.76	+0.8
2,542,902	+				+0.8
2,542,930	+				-0.8
2,542,930	+				-0.5
2,542,931	-				+1.8
2,542,993	+				-0.6
2,542,994	-				+0.6
2,542,996	+				+5.2
2,542,997	-				-2.6
2,543,014	-				+0.1
2,543,015	+				-0.4
2,543,016	-				-0.0
2,543,016	-				+2.2
2,543,016	-				-1.1
2,543,016	-				-0.6
2,543,019	+				-0.6
2,543,020	-				+1.9
2,543,020	-				+1.4
2,543,173	+				-1.8
2,543,197	+				+0.4
2,543,291	-		LU632_RS13330	0.46	+0.6
2,543,347	-		LU632_RS13330	0.73	+0.8
2,543,472	+		LU632_RS13335	0.43	+1.0
2,543,472	+		LU632_RS13335	0.43	+0.3
2,543,473	-		LU632_RS13335	0.43	-0.8
2,543,571	+				-0.8
2,543,571	+				+0.9
2,543,572	-				+0.6
2,543,600	-				+0.1
2,543,600	-				-0.7
2,543,602	+				-1.9
2,543,611	+				+0.9
2,543,611	+				+1.2
2,543,611	+				+1.6
2,543,612	-				-0.3
2,543,669	+				-0.8
2,543,669	+				+1.4
2,543,760	-		LU632_RS13340	0.36	-0.0
2,543,788	+		LU632_RS13340	0.44	+1.6
2,543,789	-		LU632_RS13340	0.44	+0.2