Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS13135

Experiment: plant=Melon; plant sample=M2; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M2; plant location=P2
2,505,516	+	rnd	LU632_RS13130	0.33	+1.1
2,505,570	+	rnd	LU632_RS13130	0.38	-2.7
2,505,571	-	rnd	LU632_RS13130	0.38	-0.3
2,505,617	-	rnd	LU632_RS13130	0.42	+0.6
2,505,641	-	rnd	LU632_RS13130	0.44	+1.8
2,505,641	-	rnd	LU632_RS13130	0.44	-1.4
2,505,657	+	rnd	LU632_RS13130	0.45	+0.3
2,506,044	+	rnd	LU632_RS13130	0.80	-1.5
2,506,044	+	rnd	LU632_RS13130	0.80	+0.5
2,506,044	+	rnd	LU632_RS13130	0.80	-0.5
2,506,048	-	rnd	LU632_RS13130	0.80	+1.4
2,506,155	-				+1.7
2,506,157	+				+0.3
2,506,157	+				+0.6
2,506,158	-				-0.1
2,506,161	+				+1.2
2,506,161	+				+1.4
2,506,162	-				+1.7
2,506,252	+				+0.4
2,506,253	-				+0.2
2,506,349	+				-1.3
2,506,353	+				-0.1
2,506,401	+				+0.3
2,506,440	+				-1.1
2,506,510	-				-0.5
2,506,644	+	fadD	LU632_RS13135	0.17	-0.8
2,506,645	-	fadD	LU632_RS13135	0.17	-2.4
2,506,677	+	fadD	LU632_RS13135	0.19	+0.4
2,506,732	-	fadD	LU632_RS13135	0.22	+0.0
2,506,762	+	fadD	LU632_RS13135	0.24	-1.1
2,506,763	-	fadD	LU632_RS13135	0.24	-1.9
2,506,822	-	fadD	LU632_RS13135	0.27	-2.1
2,506,929	+	fadD	LU632_RS13135	0.34	-1.4
2,506,934	+	fadD	LU632_RS13135	0.34	-1.2
2,506,935	-	fadD	LU632_RS13135	0.34	+0.3
2,506,957	-	fadD	LU632_RS13135	0.35	+0.2
2,506,987	+	fadD	LU632_RS13135	0.37	+0.0
2,506,987	+	fadD	LU632_RS13135	0.37	+0.6
2,506,988	-	fadD	LU632_RS13135	0.37	+0.9
2,506,991	+	fadD	LU632_RS13135	0.37	-2.9
2,506,992	-	fadD	LU632_RS13135	0.37	-0.4
2,507,124	+	fadD	LU632_RS13135	0.45	-1.0
2,507,124	+	fadD	LU632_RS13135	0.45	-0.1
2,507,124	+	fadD	LU632_RS13135	0.45	+0.5
2,507,125	-	fadD	LU632_RS13135	0.45	-0.8
2,507,309	-	fadD	LU632_RS13135	0.56	+0.8
2,507,344	-	fadD	LU632_RS13135	0.59	-1.2
2,507,358	+	fadD	LU632_RS13135	0.59	+1.5
2,507,358	+	fadD	LU632_RS13135	0.59	-0.6
2,507,359	-	fadD	LU632_RS13135	0.59	-0.4
2,507,359	-	fadD	LU632_RS13135	0.59	-1.7
2,507,437	+	fadD	LU632_RS13135	0.64	-0.7
2,507,454	-	fadD	LU632_RS13135	0.65	+0.3
2,507,459	-	fadD	LU632_RS13135	0.65	-0.8
2,507,459	-	fadD	LU632_RS13135	0.65	-0.5
2,507,535	+	fadD	LU632_RS13135	0.70	+0.2
2,507,535	+	fadD	LU632_RS13135	0.70	+0.9
2,507,537	+	fadD	LU632_RS13135	0.70	+1.5
2,507,537	+	fadD	LU632_RS13135	0.70	-1.3
2,507,537	+	fadD	LU632_RS13135	0.70	-1.5
2,507,538	-	fadD	LU632_RS13135	0.70	+1.2
2,507,605	+	fadD	LU632_RS13135	0.74	-0.3
2,507,606	-	fadD	LU632_RS13135	0.74	-0.0
2,507,606	-	fadD	LU632_RS13135	0.74	-2.8
2,507,606	-	fadD	LU632_RS13135	0.74	-0.2
2,507,696	-	fadD	LU632_RS13135	0.80	-2.1
2,507,723	+	fadD	LU632_RS13135	0.81	+0.7
2,507,724	-	fadD	LU632_RS13135	0.81	-2.1
2,507,847	+	fadD	LU632_RS13135	0.89	-2.6
2,507,852	-	fadD	LU632_RS13135	0.89	+1.5
2,507,906	-				-1.2
2,507,970	-				+1.1
2,507,970	-				+2.0
2,507,971	+				-0.7
2,507,971	+				-0.1
2,507,971	+				-0.4
2,507,971	+				-0.2
2,507,971	+				-0.1
2,507,972	-				+0.7
2,507,972	-				-0.7
2,507,972	-				+0.8
2,507,972	-				-1.0
2,507,972	-				-1.1
2,507,972	-				-0.1
2,507,974	-				-1.3
2,508,031	+				-0.8
2,508,041	+				-0.0
2,508,041	+				+1.5
2,508,041	+				-0.2
2,508,059	-				-0.7
2,508,062	+				-1.1
2,508,063	-				-1.6
2,508,063	-				-0.1
2,508,093	+				+0.2
2,508,103	-				-0.5
2,508,140	-				-1.9
2,508,143	+				-0.2
2,508,144	-				+0.2
2,508,176	-				-0.7
2,508,219	+				+0.6
2,508,450	+		LU632_RS13140	0.33	-0.3
2,508,450	+		LU632_RS13140	0.33	-0.1
2,508,699	+		LU632_RS13140	0.75	-0.3
2,508,700	-		LU632_RS13140	0.75	+0.2
2,508,729	-		LU632_RS13140	0.80	+0.4
2,508,835	+				-1.4
2,508,836	-				-3.2
2,508,850	+				-1.9
2,508,893	+				+1.5
2,508,894	-				-0.1
2,508,901	+				-3.1
2,508,991	+				+2.0
2,508,992	-				-1.1