Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS13130

Experiment: plant=Melon; plant sample=M2; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M2; plant location=P2
2,504,153	+	minD	LU632_RS13120	0.17	-1.5
2,504,154	-	minD	LU632_RS13120	0.18	-2.1
2,504,231	+	minD	LU632_RS13120	0.27	-1.2
2,504,359	-	minD	LU632_RS13120	0.43	-0.5
2,504,430	+	minD	LU632_RS13120	0.52	-1.1
2,504,430	+	minD	LU632_RS13120	0.52	-2.2
2,504,430	+	minD	LU632_RS13120	0.52	+0.5
2,504,431	-	minD	LU632_RS13120	0.52	-1.5
2,504,557	+	minD	LU632_RS13120	0.67	-1.7
2,504,558	-	minD	LU632_RS13120	0.67	-2.8
2,504,587	-	minD	LU632_RS13120	0.71	-2.0
2,504,592	-	minD	LU632_RS13120	0.71	-2.4
2,504,592	-	minD	LU632_RS13120	0.71	-1.0
2,504,606	+	minD	LU632_RS13120	0.73	-1.5
2,504,607	-	minD	LU632_RS13120	0.73	-1.5
2,504,618	+	minD	LU632_RS13120	0.75	-0.5
2,504,718	+	minD	LU632_RS13120	0.87	-0.2
2,504,719	-	minD	LU632_RS13120	0.87	+1.5
2,504,979	+	minE	LU632_RS13125	0.56	+0.5
2,504,984	-	minE	LU632_RS13125	0.58	-0.5
2,505,111	+				+0.3
2,505,128	+				+0.0
2,505,129	-				-1.1
2,505,357	+	rnd	LU632_RS13130	0.19	+1.4
2,505,359	+	rnd	LU632_RS13130	0.19	+2.5
2,505,359	+	rnd	LU632_RS13130	0.19	+1.8
2,505,516	+	rnd	LU632_RS13130	0.33	+1.1
2,505,570	+	rnd	LU632_RS13130	0.38	-2.7
2,505,571	-	rnd	LU632_RS13130	0.38	-0.3
2,505,617	-	rnd	LU632_RS13130	0.42	+0.6
2,505,641	-	rnd	LU632_RS13130	0.44	+1.8
2,505,641	-	rnd	LU632_RS13130	0.44	-1.4
2,505,657	+	rnd	LU632_RS13130	0.45	+0.3
2,506,044	+	rnd	LU632_RS13130	0.80	-1.5
2,506,044	+	rnd	LU632_RS13130	0.80	+0.5
2,506,044	+	rnd	LU632_RS13130	0.80	-0.5
2,506,048	-	rnd	LU632_RS13130	0.80	+1.4
2,506,155	-				+1.7
2,506,157	+				+0.3
2,506,157	+				+0.6
2,506,158	-				-0.1
2,506,161	+				+1.2
2,506,161	+				+1.4
2,506,162	-				+1.7
2,506,252	+				+0.4
2,506,253	-				+0.2
2,506,349	+				-1.3
2,506,353	+				-0.1
2,506,401	+				+0.3
2,506,440	+				-1.1
2,506,510	-				-0.5
2,506,644	+	fadD	LU632_RS13135	0.17	-0.8
2,506,645	-	fadD	LU632_RS13135	0.17	-2.4
2,506,677	+	fadD	LU632_RS13135	0.19	+0.4
2,506,732	-	fadD	LU632_RS13135	0.22	+0.0
2,506,762	+	fadD	LU632_RS13135	0.24	-1.1
2,506,763	-	fadD	LU632_RS13135	0.24	-1.9
2,506,822	-	fadD	LU632_RS13135	0.27	-2.1
2,506,929	+	fadD	LU632_RS13135	0.34	-1.4
2,506,934	+	fadD	LU632_RS13135	0.34	-1.2
2,506,935	-	fadD	LU632_RS13135	0.34	+0.3
2,506,957	-	fadD	LU632_RS13135	0.35	+0.2
2,506,987	+	fadD	LU632_RS13135	0.37	+0.0
2,506,987	+	fadD	LU632_RS13135	0.37	+0.6
2,506,988	-	fadD	LU632_RS13135	0.37	+0.9
2,506,991	+	fadD	LU632_RS13135	0.37	-2.9
2,506,992	-	fadD	LU632_RS13135	0.37	-0.4
2,507,124	+	fadD	LU632_RS13135	0.45	-1.0
2,507,124	+	fadD	LU632_RS13135	0.45	-0.1
2,507,124	+	fadD	LU632_RS13135	0.45	+0.5
2,507,125	-	fadD	LU632_RS13135	0.45	-0.8