Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS13010

Experiment: plant=Melon; plant sample=M2; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M2; plant location=P2
2,480,480	+		LU632_RS13005	0.61	-0.1
2,480,481	-		LU632_RS13005	0.61	-0.7
2,480,481	-		LU632_RS13005	0.61	-1.0
2,480,618	+		LU632_RS13005	0.80	-1.8
2,480,618	+		LU632_RS13005	0.80	-0.3
2,480,714	-				+0.2
2,480,714	-				-1.0
2,480,751	-				+1.5
2,480,760	-				-0.6
2,480,760	-				-0.2
2,480,868	-				-0.7
2,480,879	-				-0.6
2,481,016	-				+0.9
2,481,034	+				+0.9
2,481,057	+				-1.0
2,481,058	-				-1.4
2,481,133	+				-0.7
2,481,133	+				-0.7
2,481,134	-				+1.2
2,481,216	+				+0.7
2,481,217	-				+2.9
2,481,220	+				+0.9
2,481,221	-				+1.5
2,481,297	-				-0.9
2,481,398	-				+3.1
2,481,416	+				+0.7
2,481,417	-				-2.0
2,481,473	+				+1.7
2,481,474	-				-0.6
2,481,476	-				+2.4
2,481,476	-				+0.5
2,481,524	+				+1.0
2,481,571	-				+1.0
2,481,571	-				+0.5
2,481,575	+				+1.1
2,481,593	-				-0.1
2,481,868	+	yeaG	LU632_RS13010	0.21	+1.5
2,481,869	-	yeaG	LU632_RS13010	0.21	+0.7
2,481,872	-	yeaG	LU632_RS13010	0.21	+0.5
2,481,961	-	yeaG	LU632_RS13010	0.25	+0.8
2,481,967	+	yeaG	LU632_RS13010	0.26	-1.3
2,481,992	+	yeaG	LU632_RS13010	0.27	+0.6
2,481,992	+	yeaG	LU632_RS13010	0.27	+0.7
2,481,993	-	yeaG	LU632_RS13010	0.27	-1.3
2,481,993	-	yeaG	LU632_RS13010	0.27	+2.0
2,481,993	-	yeaG	LU632_RS13010	0.27	-0.3
2,481,993	-	yeaG	LU632_RS13010	0.27	+0.5
2,482,037	+	yeaG	LU632_RS13010	0.29	+0.9
2,482,037	+	yeaG	LU632_RS13010	0.29	-0.8
2,482,039	+	yeaG	LU632_RS13010	0.30	-0.5
2,482,039	+	yeaG	LU632_RS13010	0.30	+0.2
2,482,039	+	yeaG	LU632_RS13010	0.30	+0.5
2,482,040	-	yeaG	LU632_RS13010	0.30	+1.5
2,482,149	-	yeaG	LU632_RS13010	0.35	+0.1
2,482,201	-	yeaG	LU632_RS13010	0.38	-1.8
2,482,242	-	yeaG	LU632_RS13010	0.40	+1.2
2,482,242	-	yeaG	LU632_RS13010	0.40	-0.1
2,482,317	+	yeaG	LU632_RS13010	0.44	+0.5
2,482,317	+	yeaG	LU632_RS13010	0.44	-1.6
2,482,317	+	yeaG	LU632_RS13010	0.44	-1.0
2,482,317	+	yeaG	LU632_RS13010	0.44	-1.4
2,482,318	-	yeaG	LU632_RS13010	0.44	-0.3
2,482,318	-	yeaG	LU632_RS13010	0.44	+0.8
2,482,440	+	yeaG	LU632_RS13010	0.50	+0.8
2,482,586	+	yeaG	LU632_RS13010	0.58	-1.7
2,482,586	+	yeaG	LU632_RS13010	0.58	+2.7
2,482,587	-	yeaG	LU632_RS13010	0.58	-0.8
2,482,629	+	yeaG	LU632_RS13010	0.60	+0.9
2,482,675	-	yeaG	LU632_RS13010	0.62	+1.2
2,482,763	+	yeaG	LU632_RS13010	0.67	+0.9
2,482,809	+	yeaG	LU632_RS13010	0.69	+0.9
2,482,810	-	yeaG	LU632_RS13010	0.69	-2.2
2,482,814	-	yeaG	LU632_RS13010	0.70	+4.3
2,482,867	-	yeaG	LU632_RS13010	0.72	-0.3
2,482,902	+	yeaG	LU632_RS13010	0.74	-1.4
2,482,902	+	yeaG	LU632_RS13010	0.74	+0.0
2,483,114	+	yeaG	LU632_RS13010	0.85	+2.7
2,483,168	+	yeaG	LU632_RS13010	0.88	-0.2
2,483,168	+	yeaG	LU632_RS13010	0.88	+0.9
2,483,196	+	yeaG	LU632_RS13010	0.89	-1.3
2,483,196	+	yeaG	LU632_RS13010	0.89	-0.0
2,483,241	-				+1.1
2,483,241	-				-0.2
2,483,324	+				+0.0
2,483,324	+				-0.3
2,483,325	-				-2.1
2,483,414	+				+1.5
2,483,418	+				+0.8
2,483,419	-				-2.4
2,483,419	-				-0.2
2,483,485	+				-0.7
2,483,591	-				+0.3
2,483,824	+		LU632_RS13015	0.28	+0.6
2,483,824	+		LU632_RS13015	0.28	+0.7
2,483,825	-		LU632_RS13015	0.28	+1.8
2,483,826	+		LU632_RS13015	0.28	-0.6
2,483,826	+		LU632_RS13015	0.28	-0.8
2,483,830	+		LU632_RS13015	0.28	-0.3
2,483,830	+		LU632_RS13015	0.28	-0.1
2,483,906	-		LU632_RS13015	0.34	+1.5
2,483,913	-		LU632_RS13015	0.35	-1.5
2,483,936	-		LU632_RS13015	0.36	+0.9
2,483,959	+		LU632_RS13015	0.38	-0.2
2,484,106	+		LU632_RS13015	0.50	-1.0
2,484,160	+		LU632_RS13015	0.54	-1.1
2,484,300	-		LU632_RS13015	0.65	-0.2
2,484,321	-		LU632_RS13015	0.67	+0.4
2,484,323	-		LU632_RS13015	0.67	+0.9
2,484,341	+		LU632_RS13015	0.68	+1.2
2,484,342	-		LU632_RS13015	0.68	+1.3
2,484,355	+		LU632_RS13015	0.69	-0.5
2,484,355	+		LU632_RS13015	0.69	+0.5
2,484,356	-		LU632_RS13015	0.69	-0.8