Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS12995

Experiment: plant=Melon; plant sample=M2; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M2; plant location=P2
2,476,563	+		LU632_RS12985	0.14	+0.5
2,476,564	-		LU632_RS12985	0.14	+0.8
2,476,567	-		LU632_RS12985	0.15	-0.4
2,476,567	-		LU632_RS12985	0.15	+0.2
2,476,629	+		LU632_RS12985	0.37	-1.7
2,476,630	-		LU632_RS12985	0.38	-1.4
2,476,648	-		LU632_RS12985	0.44	-0.2
2,476,761	-		LU632_RS12985	0.85	-1.1
2,476,786	-				+0.5
2,476,803	+				+0.5
2,476,823	+				+0.9
2,476,823	+				-0.8
2,476,849	-				-0.7
2,476,862	+	msrB	LU632_RS12990	0.13	+1.7
2,476,863	-	msrB	LU632_RS12990	0.13	+0.0
2,476,863	-	msrB	LU632_RS12990	0.13	+1.5
2,476,865	+	msrB	LU632_RS12990	0.14	+1.4
2,476,865	+	msrB	LU632_RS12990	0.14	-1.5
2,476,865	+	msrB	LU632_RS12990	0.14	+0.0
2,476,866	-	msrB	LU632_RS12990	0.14	+1.3
2,476,866	-	msrB	LU632_RS12990	0.14	-0.2
2,477,011	+	msrB	LU632_RS12990	0.49	-1.4
2,477,041	+	msrB	LU632_RS12990	0.56	+0.4
2,477,042	-	msrB	LU632_RS12990	0.57	-0.2
2,477,042	-	msrB	LU632_RS12990	0.57	+0.6
2,477,089	+	msrB	LU632_RS12990	0.68	-0.4
2,477,090	-	msrB	LU632_RS12990	0.68	-1.1
2,477,090	-	msrB	LU632_RS12990	0.68	-0.2
2,477,090	-	msrB	LU632_RS12990	0.68	-1.0
2,477,121	-	msrB	LU632_RS12990	0.76	-0.2
2,477,121	-	msrB	LU632_RS12990	0.76	-0.0
2,477,161	+	msrB	LU632_RS12990	0.86	+1.6
2,477,162	-	msrB	LU632_RS12990	0.86	+0.9
2,477,253	-				+0.5
2,477,301	+				+2.4
2,477,375	+				+1.2
2,477,442	-				+2.4
2,477,475	-				-1.8
2,477,475	-				-3.2
2,478,570	-				+0.2
2,478,570	-				-0.2
2,478,625	+				+0.5
2,478,642	+				-0.7
2,478,756	+				-1.6
2,478,791	-				-0.7
2,478,855	+				-0.1
2,478,855	+				-1.5
2,478,855	+				-1.0
2,478,855	+				-1.1
2,478,856	-				-1.0
2,478,856	-				-0.3
2,478,856	-				+1.9
2,478,856	-				+0.2
2,478,856	-				+0.1
2,478,856	-				+0.2
2,478,856	-				-1.2
2,478,856	-				-1.1
2,478,857	+				-1.4
2,478,857	+				+0.9
2,478,857	+				-2.0
2,478,857	+				+0.4
2,478,857	+				+0.6
2,478,857	+				-1.0
2,478,858	-				-0.7
2,478,858	-				-0.7
2,478,858	-				-0.3
2,478,858	-				-0.4
2,478,859	+				+1.1
2,478,860	-				+0.8
2,478,864	+				-0.6
2,478,865	-				-0.3
2,478,865	-				+0.2
2,478,926	+				+0.4
2,479,023	-				+0.6
2,479,104	+		LU632_RS13000	0.16	-1.7
2,479,252	-		LU632_RS13000	0.33	+0.4
2,479,252	-		LU632_RS13000	0.33	-1.3
2,479,252	-		LU632_RS13000	0.33	-0.3
2,479,252	-		LU632_RS13000	0.33	+1.1
2,479,443	-		LU632_RS13000	0.54	+0.5
2,479,451	-		LU632_RS13000	0.55	+0.5
2,479,460	+		LU632_RS13000	0.56	-0.8
2,479,507	-		LU632_RS13000	0.62	+0.9
2,479,512	+		LU632_RS13000	0.62	+0.5
2,479,522	-		LU632_RS13000	0.63	-0.2