Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS12875

Experiment: plant=Melon; plant sample=M2; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M2; plant location=P2
2,449,926	-				+0.9
2,449,974	+	oppC	LU632_RS12870	0.10	-1.1
2,449,974	+	oppC	LU632_RS12870	0.10	-2.1
2,449,974	+	oppC	LU632_RS12870	0.10	-1.0
2,450,116	+	oppC	LU632_RS12870	0.26	+0.0
2,450,127	+	oppC	LU632_RS12870	0.27	+1.5
2,450,150	+	oppC	LU632_RS12870	0.30	-1.5
2,450,279	+	oppC	LU632_RS12870	0.44	-1.1
2,450,303	+	oppC	LU632_RS12870	0.46	-1.7
2,450,303	+	oppC	LU632_RS12870	0.46	+2.0
2,450,343	-	oppC	LU632_RS12870	0.51	-0.6
2,450,511	+	oppC	LU632_RS12870	0.69	-1.2
2,450,511	+	oppC	LU632_RS12870	0.69	-0.9
2,450,599	+	oppC	LU632_RS12870	0.79	-1.2
2,450,603	+	oppC	LU632_RS12870	0.79	-1.9
2,450,604	-	oppC	LU632_RS12870	0.80	+0.9
2,450,684	+	oppC	LU632_RS12870	0.88	+0.5
2,450,688	+	oppC	LU632_RS12870	0.89	-0.5
2,450,689	-	oppC	LU632_RS12870	0.89	-0.1
2,450,689	-	oppC	LU632_RS12870	0.89	-1.3
2,450,689	-	oppC	LU632_RS12870	0.89	+2.7
2,450,689	-	oppC	LU632_RS12870	0.89	+2.1
2,450,938	+	oppB	LU632_RS12875	0.15	-1.9
2,450,939	-	oppB	LU632_RS12875	0.15	-1.1
2,450,977	+	oppB	LU632_RS12875	0.19	-0.3
2,451,020	+	oppB	LU632_RS12875	0.24	-0.5
2,451,125	-	oppB	LU632_RS12875	0.35	+1.9
2,451,170	+	oppB	LU632_RS12875	0.40	-0.7
2,451,171	-	oppB	LU632_RS12875	0.40	+0.1
2,451,348	+	oppB	LU632_RS12875	0.59	-0.6
2,451,349	-	oppB	LU632_RS12875	0.59	-0.3
2,451,349	-	oppB	LU632_RS12875	0.59	-0.4
2,451,349	-	oppB	LU632_RS12875	0.59	-0.5
2,451,349	-	oppB	LU632_RS12875	0.59	-0.5
2,451,349	-	oppB	LU632_RS12875	0.59	-0.4
2,451,349	-	oppB	LU632_RS12875	0.59	+1.5
2,451,392	-	oppB	LU632_RS12875	0.64	+0.0
2,451,455	-	oppB	LU632_RS12875	0.71	-1.4
2,451,481	-	oppB	LU632_RS12875	0.74	-1.7
2,451,482	+	oppB	LU632_RS12875	0.74	-0.2
2,451,482	+	oppB	LU632_RS12875	0.74	+0.5
2,451,521	-	oppB	LU632_RS12875	0.78	-1.0
2,451,521	-	oppB	LU632_RS12875	0.78	-1.0
2,451,527	+	oppB	LU632_RS12875	0.79	+0.0
2,451,559	-	oppB	LU632_RS12875	0.82	-1.5
2,451,559	-	oppB	LU632_RS12875	0.82	+0.7
2,451,567	-	oppB	LU632_RS12875	0.83	-1.0
2,451,618	+	oppB	LU632_RS12875	0.88	-1.9
2,451,660	+				-2.0
2,451,660	+				+0.5
2,451,661	-				+2.9
2,451,664	-				-0.4
2,451,707	-				+0.5
2,451,805	+				+0.2
2,451,877	+				+1.7
2,451,877	+				+2.8
2,451,878	-				+0.1
2,451,878	-				-0.1
2,451,905	+				-1.3
2,451,905	-				-1.2
2,451,923	+				-2.1
2,452,049	+	oppA	LU632_RS12880	0.15	+0.1
2,452,049	+	oppA	LU632_RS12880	0.15	-2.2
2,452,050	-	oppA	LU632_RS12880	0.15	-0.4
2,452,052	+	oppA	LU632_RS12880	0.15	+0.8
2,452,074	-	oppA	LU632_RS12880	0.17	+1.5
2,452,074	-	oppA	LU632_RS12880	0.17	-1.3
2,452,076	+	oppA	LU632_RS12880	0.17	-1.1
2,452,089	-	oppA	LU632_RS12880	0.17	+1.3
2,452,089	-	oppA	LU632_RS12880	0.17	-3.0
2,452,099	+	oppA	LU632_RS12880	0.18	-0.4
2,452,233	-	oppA	LU632_RS12880	0.26	-0.4
2,452,263	-	oppA	LU632_RS12880	0.28	-1.2
2,452,299	-	oppA	LU632_RS12880	0.30	+0.4
2,452,409	-	oppA	LU632_RS12880	0.37	+0.3
2,452,422	+	oppA	LU632_RS12880	0.38	+2.1
2,452,537	+	oppA	LU632_RS12880	0.45	+2.1
2,452,538	-	oppA	LU632_RS12880	0.45	+0.5
2,452,540	+	oppA	LU632_RS12880	0.45	-0.3
2,452,540	+	oppA	LU632_RS12880	0.45	+0.3
2,452,540	+	oppA	LU632_RS12880	0.45	+2.2
2,452,540	+	oppA	LU632_RS12880	0.45	-0.9
2,452,540	+	oppA	LU632_RS12880	0.45	-0.4
2,452,541	-	oppA	LU632_RS12880	0.45	-1.7
2,452,623	-	oppA	LU632_RS12880	0.50	-1.7
2,452,624	+	oppA	LU632_RS12880	0.50	+0.5