Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS12660

Experiment: plant=Melon; plant sample=M2; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M2; plant location=P2
2,409,420	+		LU632_RS12655	0.65	+0.3
2,410,345	+				-0.1
2,410,345	+				-2.6
2,410,449	+		LU632_RS12665	0.13	-1.1
2,410,449	+		LU632_RS12665	0.13	+0.1
2,410,449	+		LU632_RS12665	0.13	-1.3
2,410,450	+		LU632_RS12665	0.13	+0.0
2,410,669	+		LU632_RS12665	0.80	+0.5
2,410,669	+		LU632_RS12665	0.80	-2.1
2,410,720	-				-0.7
2,410,788	-		LU632_RS12670	0.24	+0.9
2,410,792	-		LU632_RS12670	0.26	-0.4
2,410,796	+		LU632_RS12670	0.28	+0.5
2,410,829	+		LU632_RS12670	0.46	+0.8
2,410,829	+		LU632_RS12670	0.46	+1.5
2,410,830	-		LU632_RS12670	0.46	-1.1
2,410,830	-		LU632_RS12670	0.46	-1.3
2,410,832	+		LU632_RS12670	0.47	-0.7
2,410,833	-		LU632_RS12670	0.48	-0.4
2,410,896	+		LU632_RS12670	0.81	+0.5
2,410,919	+				+0.5
2,410,984	+				-0.4
2,411,046	+				-1.0
2,411,047	-				+2.3
2,411,047	-				-1.2
2,411,165	+				+0.6
2,411,166	-				+0.3
2,411,166	-				-0.1
2,411,202	+		LU632_RS12675	0.11	-2.2
2,411,203	-		LU632_RS12675	0.11	+2.0
2,411,203	-		LU632_RS12675	0.11	+1.1
2,411,265	+		LU632_RS12675	0.13	-0.5
2,411,266	-		LU632_RS12675	0.13	+0.4
2,411,281	+		LU632_RS12675	0.14	+1.3