Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS12465

Experiment: plant=Melon; plant sample=M2; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M2; plant location=P2
2,367,195	-	eptB	LU632_RS12460	0.83	-0.2
2,367,214	+	eptB	LU632_RS12460	0.84	-0.3
2,367,214	+	eptB	LU632_RS12460	0.84	+2.2
2,367,351	+				-0.1
2,367,352	-				-2.7
2,367,367	-				-0.2
2,367,402	+				-0.8
2,367,588	+				-0.5
2,367,635	-				+1.3
2,367,640	+				+0.3
2,367,856	-				-0.8
2,367,945	+				-0.4
2,367,978	+				+1.0
2,368,012	-				-1.5
2,368,015	+				+0.1
2,368,070	+				+1.1
2,368,102	+				+1.5
2,368,106	+				+0.2
2,368,106	+				+0.8
2,368,106	+				+0.7
2,368,107	-				+0.1
2,368,107	-				-0.9
2,368,137	-				-1.9
2,368,191	+		LU632_RS12465	0.11	+1.3
2,368,192	-		LU632_RS12465	0.11	+0.3
2,368,261	+		LU632_RS12465	0.16	+2.1
2,368,262	-		LU632_RS12465	0.16	+1.1
2,368,262	-		LU632_RS12465	0.16	+0.4
2,368,293	+		LU632_RS12465	0.19	+0.2
2,368,369	-		LU632_RS12465	0.25	+0.6
2,368,379	+		LU632_RS12465	0.25	-0.0
2,368,422	+		LU632_RS12465	0.29	-0.4
2,368,457	+		LU632_RS12465	0.32	-1.3
2,368,458	-		LU632_RS12465	0.32	-2.9
2,368,458	-		LU632_RS12465	0.32	+0.1
2,368,556	+		LU632_RS12465	0.39	+1.0
2,368,556	+		LU632_RS12465	0.39	+1.5
2,368,557	-		LU632_RS12465	0.39	+1.5
2,368,736	-		LU632_RS12465	0.53	-0.6
2,368,876	-		LU632_RS12465	0.64	+0.9
2,368,876	-		LU632_RS12465	0.64	-0.4
2,368,939	+		LU632_RS12465	0.69	+0.9
2,368,939	+		LU632_RS12465	0.69	-2.0
2,368,940	-		LU632_RS12465	0.69	-0.2
2,368,940	-		LU632_RS12465	0.69	+3.1
2,368,941	+		LU632_RS12465	0.69	-0.3
2,368,941	+		LU632_RS12465	0.69	+0.3
2,368,941	+		LU632_RS12465	0.69	-0.7
2,368,941	+		LU632_RS12465	0.69	+0.5
2,368,941	+		LU632_RS12465	0.69	-0.3
2,368,942	-		LU632_RS12465	0.70	-0.9
2,368,942	-		LU632_RS12465	0.70	+0.1
2,368,942	-		LU632_RS12465	0.70	-1.9
2,368,942	-		LU632_RS12465	0.70	+0.2
2,369,055	+		LU632_RS12465	0.78	-0.9
2,369,055	+		LU632_RS12465	0.78	-1.9
2,369,056	-		LU632_RS12465	0.79	+0.3
2,369,056	-		LU632_RS12465	0.79	-1.5
2,369,176	+		LU632_RS12465	0.88	+0.2
2,369,267	+				+0.1
2,369,267	+				+0.6
2,369,267	+				-1.1
2,369,268	-				-1.2
2,369,268	-				-0.8
2,369,268	-				+1.1
2,369,269	+				-0.8
2,369,269	+				-1.3
2,369,269	+				-0.0
2,369,269	+				-2.0
2,369,270	-				-0.4
2,369,270	-				-0.4
2,369,288	-				+1.1
2,369,391	-				+0.1
2,369,391	-				+0.6
2,369,391	-				+2.9
2,369,475	+				-0.4
2,369,481	+				-1.4
2,369,576	+				-0.7
2,369,698	+				-0.3
2,369,698	+				-1.5
2,369,807	+				+2.4
2,369,825	-				-0.2
2,369,825	-				-0.7
2,369,847	+				-0.7
2,369,976	+		LU632_RS12470	0.38	+0.9
2,369,976	+		LU632_RS12470	0.38	-0.2
2,369,977	-		LU632_RS12470	0.38	-2.7
2,370,024	+		LU632_RS12470	0.49	+1.5
2,370,024	+		LU632_RS12470	0.49	+1.6
2,370,025	-		LU632_RS12470	0.49	-2.1
2,370,025	-		LU632_RS12470	0.49	-0.5
2,370,025	-		LU632_RS12470	0.49	-0.0
2,370,025	-		LU632_RS12470	0.49	-1.5
2,370,025	-		LU632_RS12470	0.49	-1.1
2,370,157	-		LU632_RS12470	0.79	+0.6
2,370,157	-		LU632_RS12470	0.79	-0.7
2,370,160	+		LU632_RS12470	0.79	+0.1
2,370,229	+				+0.4
2,370,231	+				+1.0
2,370,231	+				-1.2
2,370,232	-				+1.8
2,370,305	-				+1.5